GSE_ID	CONTACTPERSON	SERIESTITLE	SUMMARY	CONTRIBUTORS	EXPDESIGN	PUBMEDID	PAPER_ID	SRA_STUDY_NUM	TRACKNAME	ASSAY	STAGE	TISSUE	PUBLICATION	GSM	CAT_HIERARCHY	STRAIN	SPECIES_VERSION	EXT_SPECIES_VERSION	STATUS_LIST	GSE_ROOT_FOLDER	GSE_SPECIES_VER_ROOT_FOLDER	GSE_BW_ROOT_FOLDER	GSE_TPM_ROOT_FOLDER	GSE_DE_ROOT_FOLDER	GSE_PEAK_ROOT_FOLDER	GSE_README_FILE
14025	Gert Jan Veenstra	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog	Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra	ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos	19758566	40368	SRP001343	WE - NF10-13	RNA-Seq	NF10	embryo	Akkers RC et al. (2009)	GSM352204	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/RNA-Seq/Readme.txt
14025	Gert Jan Veenstra	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog	Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra	ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos	19758566	40368	SRP001343	H3K27me3 WE - NF11-12	ChIP-Seq	NF11	embryo	Akkers RC et al. (2009)	GSM352203	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/Readme.txt
14025	Gert Jan Veenstra	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog	Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra	ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos	19758566	40368	SRP001343	H3K4me3 WE - NF11-12	ChIP-Seq	NF11	embryo	Akkers RC et al. (2009)	GSM352202	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/Readme.txt
14025	Gert Jan Veenstra	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryog	Gert Jan Veenstra, Robert Akkers, Simon van Heeringen, Ulrike Jacobi, Eva Janssen-Megens, Kees-Jan Françoijs, Hendrik Stunnenberg, Gert Veenstra	ChIP-seq profiles of two histone modifications (H3K4me3 and H3K27me3) and RNA Polymerase II, and a RNA-seq profile, of gastrula stage Xenopus tropicalis embryos	19758566	40368	SRP001343	Pol II WE - NF11-12	ChIP-Seq	NF11	embryo	Akkers RC et al. (2009)	GSM419463	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14025/XENTR_9.1/ChIP-Seq/Readme.txt
14952	Mike Gilchrist	High-throughput sequencing of small RNAs from Xenopus tropicalis	High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt 	Mike Gilchrist	Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI	19628731	40115	SRP001036	skin - adult	RNA-Seq	adult 	skin	Armisen J et al. (2009)	GSM372601	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/Readme.txt
14952	Mike Gilchrist	High-throughput sequencing of small RNAs from Xenopus tropicalis	High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt 	Mike Gilchrist	Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI	19628731	40115	SRP001036	oocyte - oocyte III-IV	RNA-Seq	oocyte  III	oocyte	Armisen J et al. (2009)	GSM372603	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/Readme.txt
14952	Mike Gilchrist	High-throughput sequencing of small RNAs from Xenopus tropicalis	High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt 	Mike Gilchrist	Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI	19628731	40115	SRP001036	oocyte - oocyte I-II	RNA-Seq	oocyte  I	oocyte	Armisen J et al. (2009)	GSM372602	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/Readme.txt
14952	Mike Gilchrist	High-throughput sequencing of small RNAs from Xenopus tropicalis	High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt 	Mike Gilchrist	Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI	19628731	40115	SRP001036	oocyte - oocyte V-VI	RNA-Seq	oocyte  V	oocyte	Armisen J et al. (2009)	GSM372604	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/Readme.txt
14952	Mike Gilchrist	High-throughput sequencing of small RNAs from Xenopus tropicalis	High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI).total RNA, ~18-42 nt 	Mike Gilchrist	Illumina/Solexa sequencing of adult liver, adult skin, oocytes stage I, II, III, IV, V, VI	19628731	40115	SRP001036	liver - adult	RNA-Seq	adult 	liver	Armisen J et al. (2009)	GSM372598	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE14952/XENTR_9.1/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		ooplasm - mature egg	RNA-Seq	mature egg 	ooplasm	Lau NC et al. (2009)	GSM389474	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		microtubule - mature egg	RNA-Seq	mature egg 	egg	Lau NC et al. (2009)	GSM389464	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		egg - mature egg	RNA-Seq	mature egg 	egg	Lau NC et al. (2009)	GSM389477,GSM389478,GSM389479,GSM389480,GSM389481	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		piwil1 ooplasm - mature egg	RNA-Seq	mature egg 	ooplasm	Lau NC et al. (2009)	GSM389473	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		microtubule - mature egg	RNA-Seq	mature egg 	egg	Lau NC et al. (2009)	GSM389476	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		ooplasm - mature egg	RNA-Seq	mature egg 	ooplasm	Lau NC et al. (2009)	GSM389472	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENTR_9.1/RNA-Seq/Readme.txt
15556	Nelson Lau	Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi	Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract.   Variou	Nelson Lau, Toshihiro Ohsumi, Mark Borowsky, Robert Kingston, Michael Blower	Small RNAs were ligated with linkers and converted to cDNA by reverse transcription.  cDNA library was amplified by PCR and was sequenced with either the 454 Genome Sequencer FLX platform or the Illumina GA-II platform.	19713941	40411		piwil1 ooplasm - mature egg	RNA-Seq	mature egg 	ooplasm	Lau NC et al. (2009)	GSM389475	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE15556/XENLA_9.2/RNA-Seq/Readme.txt
19173	Nicolas Robine	Xenopus egg small RNA associated with Y12 antibody	We examined in Xenopus tropicalis eggs piRNAs that are associated with Y12 antibody, which binds symmetrically methylated arginines that are present o	Nicolas Robine, Nelson Lau, Eric Lai	Sequencing of a cDNA library from small RNAs from the Y12 immunoprecipitate	20022248	40809	SRP001702	SNRPB egg - mature egg	RNA-Seq	mature egg 	egg	Robine N et al. (2009)	GSM475282	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE19173/XENTR_9.1/RNA-Seq/Readme.txt
21482	Gert Jan Veenstra	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how	Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra	ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos	21284373	42761	SRP002372	WE - NF10-12	RNA-Seq	NF10	embryo	van Heeringen SJ et al. (2011)	GSM632116	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq/Readme.txt
21482	Gert Jan Veenstra	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how	Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra	ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos	21284373	42761	SRP002372	TBP WE - NF12	ChIP-Seq	NF12	embryo	van Heeringen SJ et al. (2011)	GSM537039	ChIP-Seq/Transcription Factor/TBP	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/ChIP-Seq/Readme.txt
21482	Gert Jan Veenstra	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Transcription initiation involves the recruitment of basal transcription factors to the core promoter. A variety of core promoter elements exists, how	Gert Jan Veenstra, Simon van Heeringen, Waseem Akhtar, Ulrike Jacobi, Robert Akkers, Yutaka Suzuki, Gert Veenstra	ChIP-seq profiles of TBP in Xenopus tropicalis stage 12 embryos and TSS-seq profiles of Xenopus oocytes and stage 12 embryos	21284373	42761	SRP002372	WE - unfertilized egg	RNA-Seq	egg	embryo	van Heeringen SJ et al. (2011)	GSM632117	RNA-Seq/Whole Embryo/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE21482/XENTR_9.1/RNA-Seq/Readme.txt
22146	Kevin Lebrigand	microRNAs signatures of Xenopus laevis embryo epidermis at stage 11 (non ciliated) and 26 (ciliated) using high throughput sequencing	Epidermis of Xenopus embryos forms a mucociliary epithelium constituted of basal, scattered, secreting and ciliated cells and is histologically simila	Kevin Lebrigand, B Marcet, P Barbry, K Lebrigand	2 technical replicates of a pool of 50 explants for each stage 11.5 (non ciliated)  and 26 (ciliated) of Xenopus laevis development	21602795	43315	SRP002578	WE - NF26	RNA-Seq	NF26	embryo	Marcet B et al. (2011)	GSM550781,GSM550782	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq/Readme.txt
22146	Kevin Lebrigand	microRNAs signatures of Xenopus laevis embryo epidermis at stage 11 (non ciliated) and 26 (ciliated) using high throughput sequencing	Epidermis of Xenopus embryos forms a mucociliary epithelium constituted of basal, scattered, secreting and ciliated cells and is histologically simila	Kevin Lebrigand, B Marcet, P Barbry, K Lebrigand	2 technical replicates of a pool of 50 explants for each stage 11.5 (non ciliated)  and 26 (ciliated) of Xenopus laevis development	21602795	43315	SRP002578	WE - NF11-11.5	RNA-Seq	NF11	embryo	Marcet B et al. (2011)	GSM550779,GSM550780	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE22146/XENLA_9.2/RNA-Seq/Readme.txt
23913	Ozren Bogdanovic	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D	Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra	MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA	21636662	43338	SRP003559	WE - NF12.5	MBD-Seq	NF12.5	embryo	Bogdanovic O et al. (2011)	GSM589699	MBD-Seq/Epigenetic/	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/Readme.txt
23913	Ozren Bogdanovic	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D	Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra	MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA	21636662	43338	SRP003559	WE - NF12.5	MBD-Seq	NF12.5	embryo	Bogdanovic O et al. (2011)	GSM589697	MBD-Seq/Epigenetic/	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/Readme.txt
23913	Ozren Bogdanovic	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D	Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra	MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA	21636662	43338	SRP003559	WE - NF9	MBD-Seq	NF9	embryo	Bogdanovic O et al. (2011)	GSM589696	MBD-Seq/Epigenetic/	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/Readme.txt
23913	Ozren Bogdanovic	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	DNA methylation is a tightly regulated epigenetic mark associated with transcriptional repression. Next-generation sequencing of purified methylated D	Ozren Bogdanovic, Simon van Heeringen, Steven Long, Arjen Brinkman, Hendrik Stunnenberg, Peter Jones, Gert-Jan Veenstra	MethylCap (methylated DNA affinity capture with the MBD domain of MeCP2), 500mM and 700mM elution fractions of stage 9 (blastula) and stage 12.5 (gastrula) Xenopus tropicalis DNA	21636662	43338	SRP003559	WE - NF9	MBD-Seq	NF9	embryo	Bogdanovic O et al. (2011)	GSM589698	MBD-Seq/Epigenetic/	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE23913/XENTR_9.1/MBD-Seq/Readme.txt
30067	Juan Larrain	Deep sequencing of small RNAs in the Xenopus tropicalis gastrula	Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous	Juan Larrain, Fernando Faunes, Natalia Sanchez, Mauricio Moreno, Gonzalo Olivares, Dasfne Lee-Liu, Leonardo Almonacid, Alex Slater, Tomas Norambuena, Ryan Taft, John Mattick, Francisco Melo	Analysis of small RNAs expressed in the Xenopus tropicalis gastrula.	21818339	43632	SRP007217	ventral WE - NF10	RNA-Seq	NF10	embryo	Faunes F et al. (2011)	GSM744254	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq/Readme.txt
30067	Juan Larrain	Deep sequencing of small RNAs in the Xenopus tropicalis gastrula	Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous	Juan Larrain, Fernando Faunes, Natalia Sanchez, Mauricio Moreno, Gonzalo Olivares, Dasfne Lee-Liu, Leonardo Almonacid, Alex Slater, Tomas Norambuena, Ryan Taft, John Mattick, Francisco Melo	Analysis of small RNAs expressed in the Xenopus tropicalis gastrula.	21818339	43632	SRP007217	dorsal WE - NF10	RNA-Seq	NF10	dorsal	Faunes F et al. (2011)	GSM744253	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30067/XENTR_9.1/RNA-Seq/Readme.txt
30146	Se-Jin Yoon	HEB and E2A function as SMAD/FOXH1 cofactors	Nodal signaling, mediated through SMAD transcription factors, is necessary for pluripotency maintenance and endoderm commitment. We have identified a 	Se-Jin Yoon, Andrea Wills, Edward Chuong, Rakhi Gupta, Julie Baker	ChIP-seq of Smad2/3 and Input in X.tropicalis, stage 10.5 embryo.	21828274	43683	SRP007355	input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yoon SJ et al. (2011)	GSM746612	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq/Readme.txt
30146	Se-Jin Yoon	HEB and E2A function as SMAD/FOXH1 cofactors	Nodal signaling, mediated through SMAD transcription factors, is necessary for pluripotency maintenance and endoderm commitment. We have identified a 	Se-Jin Yoon, Andrea Wills, Edward Chuong, Rakhi Gupta, Julie Baker	ChIP-seq of Smad2/3 and Input in X.tropicalis, stage 10.5 embryo.	21828274	43683	SRP007355	Smad2/3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Yoon SJ et al. (2011)	GSM746611	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE30146/XENTR_9.1/ChIP-Seq/Readme.txt
33444	Cei Abreu-Goodger	miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones	During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of 	Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt	Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage.	22138647	44540	SRP009183	retina - NF24	RNA-Seq	NF24	retina	Baudet ML et al. (2011)	GSM827025,GSM827026,GSM827027	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/Readme.txt
33444	Cei Abreu-Goodger	miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones	During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of 	Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt	Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage.	22138647	44540	SRP009183	retina - NF32	RNA-Seq	NF32	retina	Baudet ML et al. (2011)	GSM827028,GSM827029,GSM827030	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/Readme.txt
33444	Cei Abreu-Goodger	miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones	During axon pathfinding, growth cones commonly exhibit changes in sensitivity to guidance cues that follow a strict timetable, even in the absence of 	Cei Abreu-Goodger, Marie-Laure Baudet, Krishna Zivraj, Alistair Muldal, Javier Armisen, Cherie Blenkiron, Leonard Goldstein, Erik Miska, Christine Holt	Two independent experiments were performed. One with a single sample for each of 3 stages, and the second with 2 biological replicates of each stage.	22138647	44540	SRP009183	retina - NF40	RNA-Seq	NF40	retina	Baudet ML et al. (2011)	GSM827031,GSM827032,GSM827033	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE33444/XENLA_9.2/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF31-32	RNA-Seq	NF31	embryo	Tan MH et al. (2013)	GSM919934,GSM919956	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF5	RNA-Seq	NF5	embryo	Tan MH et al. (2013)	GSM919941	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF44-45	RNA-Seq	NF44	embryo	Tan MH et al. (2013)	GSM919961	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF40	RNA-Seq	NF40	embryo	Tan MH et al. (2013)	GSM919936,GSM919959	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF19	RNA-Seq	NF19	embryo	Tan MH et al. (2013)	GSM919928,GSM919929,GSM919950	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF22-23	RNA-Seq	NF22	embryo	Tan MH et al. (2013)	GSM919931,GSM919952	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF37/38-39	RNA-Seq	NF37/38	embryo	Tan MH et al. (2013)	GSM919958	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF10	RNA-Seq	NF10	embryo	Tan MH et al. (2013)	GSM919923,GSM919945	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF9	RNA-Seq	NF9	embryo	Tan MH et al. (2013)	GSM919922,GSM919944	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF11-12	RNA-Seq	NF11	embryo	Tan MH et al. (2013)	GSM919924,GSM919925,GSM919946	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF2	RNA-Seq	NF2	embryo	Tan MH et al. (2013)	GSM919938	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF13-14	RNA-Seq	NF13	embryo	Tan MH et al. (2013)	GSM919947,GSM919948	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF20-21	RNA-Seq	NF20	embryo	Tan MH et al. (2013)	GSM919930,GSM919951	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF16-18	RNA-Seq	NF16	embryo	Tan MH et al. (2013)	GSM919927,GSM919949	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF41-42	RNA-Seq	NF41	embryo	Tan MH et al. (2013)	GSM919937,GSM919960	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF4	RNA-Seq	NF4	embryo	Tan MH et al. (2013)	GSM919940	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF6	RNA-Seq	NF6	embryo	Tan MH et al. (2013)	GSM919942	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF3	RNA-Seq	NF3	embryo	Tan MH et al. (2013)	GSM919939	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF28	RNA-Seq	NF28	embryo	Tan MH et al. (2013)	GSM919933,GSM919955	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF24-26	RNA-Seq	NF24	embryo	Tan MH et al. (2013)	GSM919932,GSM919953,GSM919954	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF15	RNA-Seq	NF15	embryo	Tan MH et al. (2013)	GSM919926	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF8	RNA-Seq	NF8	embryo	Tan MH et al. (2013)	GSM919943	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
37452	Kin Fai Au	RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.	We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages.	Kin Fai Au, Meng Tan, Kin Au, Arielle Yablonovitch, Andrea Wills, Julie Baker, Wing Wong, Jin Li	Examination of the transcriptome of Xenopus tropicalis from a 2-cell fertilized embryo to a stage 45 feeding tapole	22960373	45933	SRP012375	WE - NF33/34	RNA-Seq	NF33/34	embryo	Tan MH et al. (2013)	GSM919935,GSM919957	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE37452/XENTR_9.1/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF10 small RNA	RNA-Seq	NF10	embryo	Harding JL et al. (2014)	GSM945998	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF8	RNA-Seq	NF8	embryo	Harding JL et al. (2014)	GSM946002	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF8 small RNA	RNA-Seq	NF8	embryo	Harding JL et al. (2014)	GSM945997	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF18 small RNA	RNA-Seq	NF18	embryo	Harding JL et al. (2014)	GSM945999	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	vegetal pole - NF10	RNA-Seq	NF10	vegetal pole	Harding JL et al. (2014)	GSM946001	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	animal pole - NF10	RNA-Seq	NF10	animal pole	Harding JL et al. (2014)	GSM946000	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF18	RNA-Seq	NF18	embryo	Harding JL et al. (2014)	GSM946004	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Readme.txt
38605	Caroline Hill	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Here we report on genome-wide small RNA and transcriptome profiling of blastula, gastrula and neurula-stage Xenopus tropicalis embryos using deep sequ	Caroline Hill, Joanne Harding, Stuart Horswell, Javier Armisen, Lyle Zimmerman, Eric Miska, Caroline Hill	Examination of small RNAs and mRNA at 3 stages of Xenopus embryonic development.	24065776	47876	SRP013627	WE - NF10	RNA-Seq	NF10	embryo	Harding JL et al. (2014)	GSM946003	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38605/XENTR_9.1/RNA-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K27me3 WE - NF12	ChIP-Seq	NF12	embryo	van Heeringen SJ et al. (2014)	GSM1009594	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Jarid2 WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009602	ChIP-Seq/Transcription Factor/Jarid2	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K4me3 WE - NF12	ChIP-Seq	NF12	embryo	van Heeringen SJ et al. (2014)	GSM1009590	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Pol II WE - NF12	ChIP-Seq	NF12	embryo	van Heeringen SJ et al. (2014)	GSM1009598	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K4me3 WE - NF16	ChIP-Seq	NF16	embryo	van Heeringen SJ et al. (2014)	GSM1009591	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	input WE - NF29/30	ChIP-Seq	NF29/30	embryo	van Heeringen SJ et al. (2014)	GSM1009604	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K27me3 WE - NF16	ChIP-Seq	NF16	embryo	van Heeringen SJ et al. (2014)	GSM1009595	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K4me3 WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009589	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Ezh2 WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009601	ChIP-Seq/Transcription Factor/Ezh2	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Pol II WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009597	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K4me1 WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009603	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Pol II WE - NF16	ChIP-Seq	NF16	embryo	van Heeringen SJ et al. (2014)	GSM1009599	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K27me3 WE - NF9	ChIP-Seq	NF9	embryo	van Heeringen SJ et al. (2014)	GSM1009593	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	Pol II WE - NF29/30	ChIP-Seq	NF29/30	embryo	van Heeringen SJ et al. (2014)	GSM1009600	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K27me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	van Heeringen SJ et al. (2014)	GSM1009596	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41161	Gert Jan Veenstra	Principles of nucleation of H3K27 methylation during embryonic development	During embryonic development, maintenance of cell identity and lineage commitment requires the Polycomb-group PRC2 complex, which catalyzes histone H3	Gert Jan Veenstra, Simon van Heeringen, Robert Akkers, Ila van Kruijsbergen, Lars Hanssen, Nilofar Sharifi, Gert-Jan Veenstra, M. Asif Arif	ChIP-seq profiles of three histone modifications (H3K4me3, H3K27me3 and H3K4me1) and RNA Polymerase II, EZH2 and Jarid2 of Xenopus tropicalis embryos during development	24336765	47807	SRP015902	H3K4me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	van Heeringen SJ et al. (2014)	GSM1009592	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41161/XENTR_9.1/ChIP-Seq/Readme.txt
41338	Nuno Barbosa-Morais	The evolutionary landscape of alternative splicing in vertebrate species	How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t	Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe	mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq	23258890	46474	SRP015997	kidney - adult	RNA-Seq	adult 	kidney	Barbosa-Morais NL et al. (2012)	GSM1015167	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/Readme.txt
41338	Nuno Barbosa-Morais	The evolutionary landscape of alternative splicing in vertebrate species	How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t	Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe	mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq	23258890	46474	SRP015997	liver - adult	RNA-Seq	adult 	liver	Barbosa-Morais NL et al. (2012)	GSM1015166	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/Readme.txt
41338	Nuno Barbosa-Morais	The evolutionary landscape of alternative splicing in vertebrate species	How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t	Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe	mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq	23258890	46474	SRP015997	skeletal muscle - adult	RNA-Seq	adult 	skeletal muscle	Barbosa-Morais NL et al. (2012)	GSM1015169	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/Readme.txt
41338	Nuno Barbosa-Morais	The evolutionary landscape of alternative splicing in vertebrate species	How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t	Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe	mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq	23258890	46474	SRP015997	heart - adult	RNA-Seq	adult 	heart	Barbosa-Morais NL et al. (2012)	GSM1015168	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/Readme.txt
41338	Nuno Barbosa-Morais	The evolutionary landscape of alternative splicing in vertebrate species	How species with similar repertoires of protein coding genes differ so dramatically at the phenotypic level is poorly understood. From comparing the t	Nuno Barbosa-Morais, Claudia Kutter, Stephen Watt, Duncan Odom, Benjamin Blencowe	mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, pufferfish) generated by deep sequencing using Illumina HiSeq	23258890	46474	SRP015997	brain - adult	RNA-Seq	adult 	brain	Barbosa-Morais NL et al. (2012)	GSM1015165	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE41338/XENTR_9.1/RNA-Seq/Readme.txt
43512	David Sims	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive 	David Sims, Hannah Long, Chris Ponting, Robert Klose	Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues.	23467541	46753	SRP017952	WE - NF11-12	Bio-CAP-Seq	NF11	embryo	Long HK et al. (2013)	GSM1064693	Bio-CAP-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/Readme.txt
43512	David Sims	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive 	David Sims, Hannah Long, Chris Ponting, Robert Klose	Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues.	23467541	46753	SRP017952	input testis - adult	Bio-CAP-Seq	adult 	testis	Long HK et al. (2013)	GSM1064690	Bio-CAP-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/Readme.txt
43512	David Sims	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive 	David Sims, Hannah Long, Chris Ponting, Robert Klose	Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues.	23467541	46753	SRP017952	testis - adult	Bio-CAP-Seq	adult 	testis	Long HK et al. (2013)	GSM1064691	Bio-CAP-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/Readme.txt
43512	David Sims	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Two-thirds of gene promoters in mammals are associated with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive 	David Sims, Hannah Long, Chris Ponting, Robert Klose	Bio-CAP was used to identify non-methylated regions of the genome in seven diverse vertebrates (human, mouse, platypus, chicken, lizard, frog and zebrafish) across a number of tissues.	23467541	46753	SRP017952	liver - adult	Bio-CAP-Seq	adult 	liver	Long HK et al. (2013)	GSM1064692	Bio-CAP-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43512/XENTR_9.1/Bio-CAP-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	ovary - adult	RNA-Seq	adult 	ovary	Necsulea A et al. (2014)	GSM1064865,GSM1196056	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	liver (male) - adult	RNA-Seq	adult 	liver	Necsulea A et al. (2014)	GSM1064862	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	testis - adult	RNA-Seq	adult 	testis	Necsulea A et al. (2014)	GSM1064864,GSM1196057	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	heart (female) - adult	RNA-Seq	adult 	female organism	Necsulea A et al. (2014)	GSM1064859	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	liver (female) - adult	RNA-Seq	adult 	female organism	Necsulea A et al. (2014)	GSM1064863	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	brain (female) - adult	RNA-Seq	adult 	brain	Necsulea A et al. (2014)	GSM1064857	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	kidney (female) - adult	RNA-Seq	adult 	female organism	Necsulea A et al. (2014)	GSM1064861	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	heart (male) - adult	RNA-Seq	adult 	heart	Necsulea A et al. (2014)	GSM1064858	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	brain (male) - adult	RNA-Seq	adult 	brain	Necsulea A et al. (2014)	GSM1064856	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Readme.txt
43520	Anamaria Necsulea	The evolution of lncRNA repertoires and expression patterns in tetrapods	Only a minuscule fraction of long non-coding RNAs (lncRNAs) are well characterized. The evolutionary history of lncRNAs can provide insights into thei	Anamaria Necsulea, Magali Soumillon, Angélica Liechti, Tasman Daish, Ulrich Zeller, Julie Baker, Frank Grutzner, Henrik Kaessmann, Maria Warnefors	[Batch 1 and 2] To broaden our understanding of lncRNA evolution, we used an extensive RNA-seq dataset to establish lncRNA repertoires and homologous gene families in 11 tetrapod species. We analyzed the poly- adenylated transcriptomes of 8 organs (cortex/whole brain without cerebellum, cerebellum, heart, kidney, liver, placenta, ovary and testis) and 11 species (human, chimpanzee, bonobo, gorilla, orangutan, macaque, mouse, opossum, platypus, chicken and the frog Xenopus tropicalis), which shared a common ancestor ~370 millions of years (MY) ago. Our dataset included 47 strand-specific samples, which allowed us to confirm the orientation of gene predictions and to address the evolution of sense-antisense transcripts. See also GSE43721 (Soumillon et al, Cell Reports, 2013) for three strand-specific samples for mouse brain, liver and testis.	24463510	54076	SRP017959	kidney (male) - adult	RNA-Seq	adult 	kidney	Necsulea A et al. (2014)	GSM1064860	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43520/XENTR_9.1/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF9	RNA-Seq	NF9	embryo	Paranjpe SS et al. (2013)	GSM1067625	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF29/30	RNA-Seq	NF29/30	embryo	Paranjpe SS et al. (2013)	GSM1067628	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	oocyte - unfertilized egg rd	RNA-Seq	egg	oocyte	Paranjpe SS et al. (2013)	GSM1067629	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	oocyte - unfertilized egg	RNA-Seq	egg	oocyte	Paranjpe SS et al. (2013)	GSM1067623	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF6 rd	RNA-Seq	NF6	embryo	Paranjpe SS et al. (2013)	GSM1067630	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF16	RNA-Seq	NF16	embryo	Paranjpe SS et al. (2013)	GSM1067627	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF12	RNA-Seq	NF12	embryo	Paranjpe SS et al. (2013)	GSM1067626	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF6	RNA-Seq	NF6	embryo	Paranjpe SS et al. (2013)	GSM1067624	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Readme.txt
43652	Gert Jan Veenstra	A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development	To analyze the dynamics and diversity of coding and non-coding transcripts during development, both polyadenylated mRNA and ribosomal RNA-depleted tot	Gert Jan Veenstra, Sarita Paranjpe, Ulrike Jacobi, Simon van Heeringen, Gert Veenstra	Profiles of polyadenylated mRNA (6 stages) and ribosomal RNA-depleted total RNA (3 stages) through early Xenopus tropicalis development	24195446	47572	SRP018091	WE - NF9 rd	RNA-Seq	NF9	embryo	Paranjpe SS et al. (2013)	GSM1067631	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE43652/XENTR_9.1/RNA-Seq/Readme.txt
45786	Panna Tandon	Cardiac transcriptome of Tcf21-depleted Xenopus embryos	The aim of the approach was to use RNAseq analysis to identify genes expressed in  Xenopus epicardium that were affected by embryonic depletion of the	Panna Tandon, Frank Conlon, Nirav Amin	mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GAII.	23637334	47035	SRP020536	heart + tcf21 MO - NF44-45	RNA-Seq	NF44	heart	Tandon P et al. (2013)	GSM1115089	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/Readme.txt
45786	Panna Tandon	Cardiac transcriptome of Tcf21-depleted Xenopus embryos	The aim of the approach was to use RNAseq analysis to identify genes expressed in  Xenopus epicardium that were affected by embryonic depletion of the	Panna Tandon, Frank Conlon, Nirav Amin	mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GAII.	23637334	47035	SRP020536	heart + tcf21 MO - NF44-45	RNA-Seq	NF44	heart	Tandon P et al. (2013)	GSM1115089	Manipulations/Morpholino	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/Readme.txt
45786	Panna Tandon	Cardiac transcriptome of Tcf21-depleted Xenopus embryos	The aim of the approach was to use RNAseq analysis to identify genes expressed in  Xenopus epicardium that were affected by embryonic depletion of the	Panna Tandon, Frank Conlon, Nirav Amin	mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GAII.	23637334	47035	SRP020536	heart + tcf21 control MO - NF44-45	RNA-Seq	NF44	heart	Tandon P et al. (2013)	GSM1115088	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/Readme.txt
45786	Panna Tandon	Cardiac transcriptome of Tcf21-depleted Xenopus embryos	The aim of the approach was to use RNAseq analysis to identify genes expressed in  Xenopus epicardium that were affected by embryonic depletion of the	Panna Tandon, Frank Conlon, Nirav Amin	mRNA profiles of stage 44-45 Xenopus laevis sibling hearts from control or Tcf21-depleted embryos, were generated by deep sequencing using Illumina GAII.	23637334	47035	SRP020536	heart + tcf21 control MO - NF44-45	RNA-Seq	NF44	heart	Tandon P et al. (2013)	GSM1115088	Manipulations/Morpholino	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE45786/XENLA_9.2/RNA-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	Xbra WE - NF12.5	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180932,GSM1180938	ChIP-Seq/Transcription Factor/Xbra	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	input WE - NF20	ChIP-Seq	NF20	embryo	Gentsch GE et al. (2013)	GSM1180941	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	Xbra WE - NF20	ChIP-Seq	NF20	embryo	Gentsch GE et al. (2013)	GSM1180940	ChIP-Seq/Transcription Factor/Xbra	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	input WE - NF12.5 (vegt)	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180937	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	input WE - NF12.5	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180933,GSM1180939	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	input WE - NF12.5 (xeomes)	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180935	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	vegt WE - NF12.5	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180936	ChIP-Seq/Transcription Factor/vegt	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Readme.txt
48560	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.	We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesode	George Gentsch, George Gentsch, James Smith	Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)	24055059	47416	SRP026570	Eomes WE - NF12.5	ChIP-Seq	NF12.5	embryo	Gentsch GE et al. (2013)	GSM1180934	ChIP-Seq/Transcription Factor/Eomes	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48560/XENTR_9.1/ChIP-Seq/Readme.txt
48663	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency	Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript	George Gentsch, George Gentsch, James Smith	Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates.	24055059	47416	SRP026685	WE - NF20	RNA-Seq	NF20	embryo	Gentsch GE et al. (2013)	GSM1183062	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/Readme.txt
48663	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency	Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript	George Gentsch, George Gentsch, James Smith	Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates.	24055059	47416	SRP026685	WE + tbxt.2 MO + tbxt MO - NF32	RNA-Seq	NF32	embryo	Gentsch GE et al. (2013)	GSM1183056,GSM1183057,GSM1183058	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/Readme.txt
48663	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency	Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript	George Gentsch, George Gentsch, James Smith	Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates.	24055059	47416	SRP026685	WE + tbxt.2 MO + tbxt MO - NF32	RNA-Seq	NF32	embryo	Gentsch GE et al. (2013)	GSM1183056,GSM1183057,GSM1183058	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/Readme.txt
48663	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency	Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript	George Gentsch, George Gentsch, James Smith	Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates.	24055059	47416	SRP026685	WE + hbg1 MO - NF32	RNA-Seq	NF32	embryo	Gentsch GE et al. (2013)	GSM1183059,GSM1183060,GSM1183061	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/Readme.txt
48663	George Gentsch	In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency	Brachyury (Xbra/Xbra3) knock-down embryos of the frog Xenopus tropicalis were profiled to quantify neuro-mesodermal cell fate switches at a transcript	George Gentsch, George Gentsch, James Smith	Transcriptional profiling of Xbra/Xbra3 double morphants at early tadpole stage (RNA-Seq) in biological triplicates.	24055059	47416	SRP026685	WE + hbg1 MO - NF32	RNA-Seq	NF32	embryo	Gentsch GE et al. (2013)	GSM1183059,GSM1183060,GSM1183061	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE48663/XENTR_9.1/RNA-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	input WE - NF20	ChIP-Seq	NF20	embryo	Chung MI et al. (2014)	GSM1224377	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	animal cap + rfx2 MO - NF20	RNA-Seq	NF20	animal cap	Chung MI et al. (2014)	GSM1224374,GSM1224375	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	animal cap + rfx2 MO - NF20	RNA-Seq	NF20	animal cap	Chung MI et al. (2014)	GSM1224374,GSM1224375	Manipulations/Morpholino	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	rfx2 WE - NF20	ChIP-Seq	NF20	embryo	Chung MI et al. (2014)	GSM1224376	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	rfx2 WE - NF20	ChIP-Seq	NF20	embryo	Chung MI et al. (2014)	GSM1224376	ChIP-Seq/Transcription Factor/Rfx2	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/ChIP-Seq/Readme.txt
50593	Taejoon Kwon	Coordinated genomic control of ciliogenesis and cell movement by Rfx2	We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of R	Taejoon Kwon, Mei-I Chung, Rakhi Gupta, Julie Baker, Edward Marcotte, John Wallingford	RNA-seq: two biological replicates for control and RFX2 knockdown by morpholino injection, ChIP-seq: RFX2-GFP pulldown with GFP antibody, GFP only expression used as control	24424412	51735	SRP029582	animal cap - NF20	RNA-Seq	NF20	animal cap	Chung MI et al. (2014)	GSM1224372,GSM1224373	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE50593/XENLA_9.2/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF9	RNA-Seq	NF9	embryo	Subtelny AO et al. (2014)	GSM1276565	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF3-4 (Ribo-Seq)	RNA-Seq	NF3	embryo	Subtelny AO et al. (2014)	GSM1276564	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF3-4	RNA-Seq	NF3	embryo	Subtelny AO et al. (2014)	GSM1276563	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF12-12.5	RNA-Seq	NF12	embryo	Subtelny AO et al. (2014)	GSM1316825	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF9 (PAL-Seq)	RNA-Seq	NF9	embryo	Subtelny AO et al. (2014)	GSM1316824	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF12-12.5 (PAL-Seq)	RNA-Seq	NF12	embryo	Subtelny AO et al. (2014)	GSM1316827	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF9 (Ribo-Seq)	RNA-Seq	NF9	embryo	Subtelny AO et al. (2014)	GSM1276566	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF12-12.5 (Ribo-Seq)	RNA-Seq	NF12	embryo	Subtelny AO et al. (2014)	GSM1316826	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Readme.txt
52809	Stephen Eichhorn	Poly(A)-tail profiling reveals an embryonic switch in translational control	Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths hav	Stephen Eichhorn, Alexander Subtelny, Stephen Eichhorn, Grace Chen, Hazel Sive, David Bartel	64 samples from a variety of species	24476825	48919	SRP033369	WE - NF3-4 (PAL-Seq)	RNA-Seq	NF3	embryo	Subtelny AO et al. (2014)	GSM1316823	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE52809/XENLA_9.2/RNA-Seq/Readme.txt
53652	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq]	We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a	William Chiu, William Chiu, Ken Cho	Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach.	25359723	49634	SRP034730	Foxh1 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298090,GSM1298091	ChIP-Seq/Transcription Factor/Foxh1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/Readme.txt
53652	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq]	We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a	William Chiu, William Chiu, Ken Cho	Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach.	25359723	49634	SRP034730	input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298094	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/Readme.txt
53652	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq]	We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 a	William Chiu, William Chiu, Ken Cho	Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach.	25359723	49634	SRP034730	Smad2/3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298092,GSM1298093	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53652/XENTR_9.1/ChIP-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + foxh1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298098	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + foxh1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298098	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + SB431542 - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298096	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + SB431542 - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298096	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + EtOH - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298095	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE + EtOH - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298095	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Readme.txt
53653	William Chiu	Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq]	We identified Nodal and Foxh1 downstream targets by performing RNA-seq of embryos either treated with small molecule SB431542 or microinjected morphol	William Chiu, William Chiu, Ken Cho	Differential gene expression analyses of perturbed embryos (SB431542 treated, or Foxh1 MO injected) using RNA-seq	25359723	49634	SRP034731	WE - NF10.5	RNA-Seq	NF10.5	embryo	Chiu WT et al. (2014)	GSM1298097	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE53653/XENTR_9.1/RNA-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	Smad2/3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350507	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27ac WE + SB431542 - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350520	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27ac WE + SB431542 - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350520	ChIP-Seq/Epigenetic/H3K27ac	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	WE - NF8	RNA-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350522	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350504	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me1 WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350512	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350510	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me1 WE + SB431542 - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350521	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me1 WE + SB431542 - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350521	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27me2me3 WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350518	ChIP-Seq/Epigenetic/H3K27me2me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27ac WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350514	ChIP-Seq/Epigenetic/H3K27ac	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me3 WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350508	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	input WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350502	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me1 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350513	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27me2me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350519	ChIP-Seq/Epigenetic/H3K27me2me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me1 WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350511	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	Smad2/3 WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350506	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	input WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350503	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27ac WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350515	ChIP-Seq/Epigenetic/H3K27ac	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	Smad2/3 WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350505	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350525	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350525	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27ac WE - NF10.5	ChIP-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350516	ChIP-Seq/Epigenetic/H3K27ac	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K4me3 WE - NF9	ChIP-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350509	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	WE - NF9	RNA-Seq	NF9	embryo	Gupta R et al. (2014)	GSM1350523	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	H3K27me2me3 WE - NF8	ChIP-Seq	NF8	embryo	Gupta R et al. (2014)	GSM1350517	ChIP-Seq/Epigenetic/H3K27me2me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/ChIP-Seq/Readme.txt
56000	Julie Baker	Enhancer chromatin signatures predict Smad2/3 binding in Xenopus	In this study we have examine the deposition of H3K4me1,H3K4Me3 and H3K27Ac and the Nodal transcription factor, Smad2/3, immediately following zygotic	Julie Baker, Rakhi Gupta	We profiled 4 histone modifications (H3K4Me3, H3K27Me3, H3K27AC, H3K4Me1) and one transcription factor smad2/3 (+ chromatin input) using ChIP-Seq, and expression profiles (3' RNA-Seq) for Xenopus tropicalis embryos stage8, stage9 and stage10.5. Furthermore, we have profile two histone modifications (H3K4Me1 and H3K27Ac) in absance of nodal signaling in stage9 Xenopus tropicalis embryos using ChIP-seq and 3-seq	25205067	49423	SRP040298	WE - NF10.5	RNA-Seq	NF10.5	embryo	Gupta R et al. (2014)	GSM1350524	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56000/XENTR_9.1/RNA-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	WE + tcf3 MO - NF10.5	RNA-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357041,GSM1357042	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	WE + tcf3 MO - NF10.5	RNA-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357041,GSM1357042	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	Smad2/3 WE + tcf3 MO - NF10.5	ChIP-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357034,GSM1357035,GSM1357036	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	Smad2/3 WE + tcf3 MO - NF10.5	ChIP-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357034,GSM1357035,GSM1357036	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	WE - NF10.5	RNA-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357039,GSM1357040	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/RNA-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357037,GSM1357038	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/Readme.txt
56169	Andrea Wills	E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty	We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription 	Andrea Wills, Andrea Wills, Julie Baker	For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos.  For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.	25669884	50519	SRP040548	Smad2/3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Wills AE et al. (2015)	GSM1357032,GSM1357033	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56169/XENTR_9.1/ChIP-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF5 (2.5hpf) - Series3	RNA-Seq	NF5	embryo	Collart C et al. (2014)	GSM1357570	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (5.5hpf) - Series2	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357554	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (8.0hpf) - Series3 rd	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357592	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (7.0hpf) - Series3 rd	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357591	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (6.0hpf) - Series3 rd	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357590	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF2 (1.0hpf) - Series1	RNA-Seq	NF2	embryo	Collart C et al. (2014)	GSM1357543	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (8.0hpf) - Series3	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357581	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF1 (0.0hpf) - Series3 rd	RNA-Seq	NF1	zygote	Collart C et al. (2014)	GSM1357584	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF11.5 (9.5hpf) - Series2	RNA-Seq	NF11.5	embryo	Collart C et al. (2014)	GSM1357562	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (7.5hpf) - Series3	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357580	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF6 (3.0hpf) - Series3 rd	RNA-Seq	NF6	embryo	Collart C et al. (2014)	GSM1357587	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (7.0hpf) - Series3	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357579	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF11 (9.0hpf) - Series2	RNA-Seq	NF11	embryo	Collart C et al. (2014)	GSM1357561	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (5.0hpf) - Series3	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357575	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (4.5hpf) - Series2	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357552,GSM1357563	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF10 (9.0hpf) - Series3	RNA-Seq	NF10	embryo	Collart C et al. (2014)	GSM1357583	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF3 (1.5hpf) - Series1	RNA-Seq	NF3	embryo	Collart C et al. (2014)	GSM1357544	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (5.0hpf) - Series2	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357553	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (4.0hpf) - Series3	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357573	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF1 (0.5hpf) - Series1	RNA-Seq	NF1	embryo	Collart C et al. (2014)	GSM1357542	RNA-Seq/Whole Embryo/fertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (5.0hpf) - Series3 rd	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357589	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (5.5hpf) - Series3	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357576	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF1 (0.0hpf) - Series3	RNA-Seq	NF1	zygote	Collart C et al. (2014)	GSM1357565	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF2 (1.0hpf) - Series3	RNA-Seq	NF2	embryo	Collart C et al. (2014)	GSM1357567	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF10.25 (7.5hpf) - Series2	RNA-Seq	NF10.25	embryo	Collart C et al. (2014)	GSM1357558	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (6.5hpf) - Series3	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357578	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF10.5 (8.0hpf) - Series2	RNA-Seq	NF10.5	embryo	Collart C et al. (2014)	GSM1357559	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (4.5hpf) - Series3	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357574	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (6.0hpf) - Series2	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357555	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF1 (0.5hpf) - Series3	RNA-Seq	NF1	embryo	Collart C et al. (2014)	GSM1357566	RNA-Seq/Whole Embryo/fertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (3.0hpf) - Series1	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357547	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF6 (2.5hpf) - Series2	RNA-Seq	NF6	embryo	Collart C et al. (2014)	GSM1357548	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (8.5hpf) - Series3	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357582	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (3.0hpf) - Series2	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357549	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF2 (1.5hpf) - Series3	RNA-Seq	NF2	embryo	Collart C et al. (2014)	GSM1357568	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF6 (2.5hpf) - Series1	RNA-Seq	NF6	embryo	Collart C et al. (2014)	GSM1357546	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF6 (3.0hpf) - Series3	RNA-Seq	NF6	embryo	Collart C et al. (2014)	GSM1357571	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF6 (3.5hpf) - Series3	RNA-Seq	NF6	embryo	Collart C et al. (2014)	GSM1357572	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF1 (0.0hpf) - Series1	RNA-Seq	NF1	zygote	Collart C et al. (2014)	GSM1357541	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF10.5 (8.5hpf) - Series2	RNA-Seq	NF10.5	embryo	Collart C et al. (2014)	GSM1357560	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF9 (6.5hpf) - Series2	RNA-Seq	NF9	embryo	Collart C et al. (2014)	GSM1357556,GSM1357564	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (3.5hpf) - Series2	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357550	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF7 (4.0hpf) - Series3 rd	RNA-Seq	NF7	embryo	Collart C et al. (2014)	GSM1357588	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF4 (2.0hpf) - Series3 rd	RNA-Seq	NF4	embryo	Collart C et al. (2014)	GSM1357586	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF4 (2.0hpf) - Series3	RNA-Seq	NF4	embryo	Collart C et al. (2014)	GSM1357569	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (4.0hpf) - Series2	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357551	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF5 (2.0hpf) - Series1	RNA-Seq	NF5	embryo	Collart C et al. (2014)	GSM1357545	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF10 (7.0hpf) - Series2	RNA-Seq	NF10	embryo	Collart C et al. (2014)	GSM1357557	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF8 (6.0hpf) - Series3	RNA-Seq	NF8	embryo	Collart C et al. (2014)	GSM1357577	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56242	Mike Gilchrist	High-resolution analysis of gene activity during the Xenopus mid-blastula transition	The Xenopus mid-blastula transition (MBT) marks the onset of large-scale zygotic transcription, as well as an increase in cell cycle length and a loss	Mike Gilchrist, Clara Collart, Nick Owens, Leena Bhaw-Rosun, Brook Cooper, Elena De Domenico, Ilya Patrushev, Abdul Sesay, James Smith, James Smith, Michael Gilchrist	Time series polyA+ and RiboZero RNA sequencing of Xenopus Embryos covering 0-9.5 hours post fertilization	24757007	48872	SRP040589	WE - NF2 (1.0hpf) - Series3 rd	RNA-Seq	NF2	embryo	Collart C et al. (2014)	GSM1357585	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56242/XENTR_9.1/RNA-Seq/Readme.txt
56586	Gert Jan Veenstra	Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs	Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote	Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen	RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos.	25056316	49279	SRP041021	WE - NF1 rd	RNA-Seq	NF1	zygote	Smits AH et al. (2014)	GSM1364749,GSM1364750,GSM1364751,GSM1364752,GSM1364753	RNA-Seq/Embryonic Tissues/fertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/Readme.txt
56586	Gert Jan Veenstra	Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs	Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote	Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen	RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos.	25056316	49279	SRP041021	WE - NF10.5 rd technical rep	RNA-Seq	NF10.5	embryo	Smits AH et al. (2014)	GSM1430931,GSM1430932,GSM1430933	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/Readme.txt
56586	Gert Jan Veenstra	Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs	Recent developments in genomic sequencing technology have enabled comprehensive transcriptome analyses of single cells. In contrast, single cell prote	Gert Jan Veenstra, Arne Smits, Rik Lindeboom, Matteo Perino, Simon van Heeringen, GertJan Veenstra, Michiel Vermeulen	RNA-seq in Xenopus laevis of 5 replicates of both single eggs and single embryos.	25056316	49279	SRP041021	WE - NF10.5 rd	RNA-Seq	NF10.5	embryo	Smits AH et al. (2014)	GSM1430926,GSM1430927,GSM1430928,GSM1430929,GSM1430930	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56586/XENLA_9.2/RNA-Seq/Readme.txt
56680	Maria Warnefors	MicroRNA editing in Xenopus tropicalis	We collected small RNA sequencing data from brain and heart of an adult Xenopus tropicalis individual to investigate the conservation of site-specific	Maria Warnefors, Angélica Liechti, Jean Halbert, Delphine Valloton, Henrik Kaessmann	Sequencing of 2 small RNA sequencing libraries	24964909	50469	SRP041076	brain - adult	miRNA-Seq	adult 	brain	Warnefors M et al. (2014)	GSM1366781	miRNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq/Readme.txt
56680	Maria Warnefors	MicroRNA editing in Xenopus tropicalis	We collected small RNA sequencing data from brain and heart of an adult Xenopus tropicalis individual to investigate the conservation of site-specific	Maria Warnefors, Angélica Liechti, Jean Halbert, Delphine Valloton, Henrik Kaessmann	Sequencing of 2 small RNA sequencing libraries	24964909	50469	SRP041076	heart - adult	miRNA-Seq	adult 	heart	Warnefors M et al. (2014)	GSM1366782	miRNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE56680/XENTR_9.1/miRNA-Seq/Readme.txt
58420	Gabriela Salinas-Riester	Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes	RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the 	Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler	mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed.	26337391	51224	SRP043147	animal oocyte - oocyte VI	RNA-Seq	oocyte  VI	animal	Claußen M et al. (2017)	GSM1410597,GSM1410598,GSM1410599,GSM1410600	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq/Readme.txt
58420	Gabriela Salinas-Riester	Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes	RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the 	Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler	mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed.	26337391	51224	SRP043147	animal oocyte - oocyte VI	RNA-Seq	oocyte  VI	animal	Claußen M et al. (2017)	GSM1410605,GSM1410606	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq/Readme.txt
58420	Gabriela Salinas-Riester	Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes	RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the 	Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler	mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed.	26337391	51224	SRP043147	vegetal oocyte - oocyte VI	RNA-Seq	oocyte  VI	oocyte	Claußen M et al. (2017)	GSM1410607,GSM1410608	RNA-Seq/Embryonic Tissues/unfertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENTR_9.1/RNA-Seq/Readme.txt
58420	Gabriela Salinas-Riester	Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes	RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the 	Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler	mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed.	26337391	51224	SRP043147	vegetal oocyte - oocyte VI	RNA-Seq	oocyte  VI	oocyte	Claußen M et al. (2017)	GSM1410601,GSM1410602,GSM1410603,GSM1410604	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE58420/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	e2f4 animal cap - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434789	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	e2f4 animal cap - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434789	ChIP-Seq/Transcription Factor/E2F4	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF13	RNA-Seq	NF13	animal cap	Ma L et al. (2014)	GSM1434771,GSM1434772,GSM1434773	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF13	RNA-Seq	NF13	animal cap	Ma L et al. (2014)	GSM1434771,GSM1434772,GSM1434773	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	e2f4 animal cap + mcidas - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434790	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	e2f4 animal cap + mcidas - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434790	ChIP-Seq/Transcription Factor/E2F4	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF16	RNA-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434777,GSM1434778,GSM1434779	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF16	RNA-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434777,GSM1434778,GSM1434779	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	input animal cap - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434791	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF13	RNA-Seq	NF13	animal cap	Ma L et al. (2014)	GSM1434774,GSM1434775,GSM1434776	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF13	RNA-Seq	NF13	animal cap	Ma L et al. (2014)	GSM1434774,GSM1434775,GSM1434776	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF18	RNA-Seq	NF18	animal cap	Ma L et al. (2014)	GSM1434783,GSM1434784,GSM1434785	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas - NF18	RNA-Seq	NF18	animal cap	Ma L et al. (2014)	GSM1434783,GSM1434784,GSM1434785	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF16	RNA-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434780,GSM1434781,GSM1434782	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF16	RNA-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434780,GSM1434781,GSM1434782	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF18	RNA-Seq	NF18	animal cap	Ma L et al. (2014)	GSM1434786,GSM1434787,GSM1434788	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	animal cap + mcidas + DNe2f4 - NF18	RNA-Seq	NF18	animal cap	Ma L et al. (2014)	GSM1434786,GSM1434787,GSM1434788	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/RNA-Seq/Readme.txt
59309	Ian Quigley	Multicilin drives centriole biogenesis via E2f proteins	Biochemistry suggests e2f4 forms a complex with the coiled-coiled protein multicilin (MCIDAS), a protein that is necessary and sufficient to specify m	Ian Quigley, Lina Ma, Chris Kintner	RNAseq: misexpression of multicilin-HGR +/- dominant-negative e2f4 messenger RNAs in X. laevis animal caps, multicilin induced with dexamethasone at mid-stage 11 and harvested at 3 timepoints (3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18) with 3 biological replicates.
ChIPseq: misexpression of e2f4-GFP +/- multicilin-HGR messenger RNAs in X. laevis animal caps, multicilin induced at mid-stage 11 and harvested at one timepoint (6 hours after induction, roughly corresponding to stage 16), immunoprecipitated with anti-GFP and sequenced;  2 biological replicates. Background was input prior to IP.	24934224	49750	SRP044238	input animal cap + mcidas - NF16	ChIP-Seq	NF16	animal cap	Ma L et al. (2014)	GSM1434792	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE59309/XENLA_9.2/ChIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil1 oocyte - adult	CLIP-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544071,GSM1544072	CLIP-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil2 oocyte - adult	ncRNA-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544077	ncRNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil1 oocyte - adult	ncRNA-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544076	ncRNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/ncRNA-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil1 spermatid - adult	CLIP-Seq	adult 	spermatid	Toombs JA et al. (2017)	GSM1544073	CLIP-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil2 oocyte - adult	CLIP-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544070	CLIP-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/CLIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil2 oocyte - adult	RIP-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544079	RIP-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	oocyte - oocyte V-VI	RNA-Seq	oocyte  V	oocyte	Toombs JA et al. (2017)	GSM1544075	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	piwil1 oocyte - adult	RIP-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544078	RIP-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RIP-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	oocyte - oocyte III-IV	RNA-Seq	oocyte  III	oocyte	Toombs JA et al. (2017)	GSM1544074	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENTR_9.1/RNA-Seq/Readme.txt
63228	Nelson Lau	Xenopus Piwi protein associated transcripts indicate regulation beyond transposons	This study examines the population of transcripts associated with the Xenopus Piwi proteins, Xiwi and Xili, from X.laevis and X.tropicalis. RIP-seq, C	Nelson Lau, Trey Toombs, Yuliya Sytnkova, Gungwei Chirn, Michael Blower	We performed several replicates of a Piw CLIP-Seq experiment to isolate RNA fragments as CLIP-tags to discover which transcripts are preferentially bound by the Piwi protein.  Then we performed several types of mRNA expression profiling experiments using several forms of mRNA-Seq library construction formats.  Finally, we sequenced the piRNAs from the OSS cells	28031481	52877	SRP049739	oocyte - adult	RNA-Seq	adult 	oocyte	Toombs JA et al. (2017)	GSM1544080	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE63228/XENLA_9.2/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + prdm12 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574075,GSM1574076	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + prdm12 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574075,GSM1574076	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	prdm12 animal cap + nog + RA - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574082	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	prdm12 animal cap + nog + RA - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574082	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	prdm12 animal cap + nog + RA - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574082	ChIP-Seq/Transcription Factor/Prdm12	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	prdm12 animal cap - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574081	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	prdm12 animal cap - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574081	ChIP-Seq/Transcription Factor/Prdm12	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	input animal cap + nog + RA - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574084	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	input animal cap - NF28	ChIP-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574083	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/ChIP-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + prdm12-VP16 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574077,GSM1574078	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + prdm12-VP16 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574077,GSM1574078	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + nog - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574073,GSM1574074	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + nog - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574073,GSM1574074	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574071,GSM1574072	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + EnR-prdm12 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574079,GSM1574080	RNA-Seq/Embryonic Tissues/Tailbud NF22 to NF44/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Readme.txt
64551	Ian Quigley	Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue	V1 interneurons are a class of inhibitory neurons that play an essential role in vertebrate locomotion; however, the factors contributing to their spe	Ian Quigley, Kristine Henningfeld, Chris Kintner, Eric Bellefroid, Claude Van Campenhout	X. laevis embryos were injected with mRNAs encoding prdm12 constructs, along with the bmp inhibitor noggin. Presumptive ectoderm (neuralized by noggin) was dissected and treated with retinoic acid. Samples were then processed into RNAseq libraries or prdm12-FLAG was immunoprecipitated and its targets sequenced. Background was input prior to IP.	26443638	51355	SRP051597	animal cap + EnR-prdm12 - NF28	RNA-Seq	NF28	animal cap	Thélie A et al. (2015)	GSM1574079,GSM1574080	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE64551/XENLA_9.2/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF18-19 (15.5hpf) - ClutchA rd	RNA-Seq	NF18	embryo	Owens ND et al. (2016)	GSM1606296	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11hpf) - ClutchA rd	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606286	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF11 (8hpf) - ClutchA rd	RNA-Seq	NF11	embryo	Owens ND et al. (2016)	GSM1606279	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF43 (64hpf) - ClutchA	RNA-Seq	NF43	embryo	Owens ND et al. (2016)	GSM1606262,GSM1606270	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (14hpf) - ClutchA rd	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606292	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF33/34 (34hpf) - ClutchA	RNA-Seq	NF33/34	embryo	Owens ND et al. (2016)	GSM1606233	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF23 (18.5hpf) - ClutchA	RNA-Seq	NF23	embryo	Owens ND et al. (2016)	GSM1606212	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF32 (32hpf) - ClutchA	RNA-Seq	NF32	embryo	Owens ND et al. (2016)	GSM1606231	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (16.5hpf) - ClutchA	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606208	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21hpf) - ClutchA	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606217	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (56hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606254	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF28 (27hpf) - ClutchA	RNA-Seq	NF28	embryo	Owens ND et al. (2016)	GSM1606226	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21.5hpf) - ClutchA rd	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606309	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF39 (42hpf) - ClutchA	RNA-Seq	NF39	embryo	Owens ND et al. (2016)	GSM1606241	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF31 (30hpf) - ClutchA	RNA-Seq	NF31	embryo	Owens ND et al. (2016)	GSM1606229,GSM1606267	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (6.5hpf) - ClutchA	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606188	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF40 (48hpf) - ClutchA	RNA-Seq	NF40	embryo	Owens ND et al. (2016)	GSM1606246	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF15 (14.5hpf) - ClutchA	RNA-Seq	NF15	embryo	Owens ND et al. (2016)	GSM1606204	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF39 (44hpf) - ClutchA	RNA-Seq	NF39	embryo	Owens ND et al. (2016)	GSM1606242	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3.5hpf) - ClutchA	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606182	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF2- (1hpf) - ClutchA rd	RNA-Seq	NF2-	embryo	Owens ND et al. (2016)	GSM1606284	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11.5hpf) - ClutchA	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606198,GSM1606265	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF15 (14.5hpf) - ClutchA rd	RNA-Seq	NF15	embryo	Owens ND et al. (2016)	GSM1606293	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (17.5hpf) - ClutchA	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606210	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF6 (2.5hpf) - ClutchA	RNA-Seq	NF6	embryo	Owens ND et al. (2016)	GSM1606180	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (4.5hpf) - ClutchA rd	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606318	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF40 (50hpf) - ClutchA	RNA-Seq	NF40	embryo	Owens ND et al. (2016)	GSM1606248	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF29/30 (29hpf) - ClutchA	RNA-Seq	NF29/30	embryo	Owens ND et al. (2016)	GSM1606228	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF40 (46hpf) - ClutchA	RNA-Seq	NF40	embryo	Owens ND et al. (2016)	GSM1606244	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF23 (18.5hpf) - ClutchA rd	RNA-Seq	NF23	embryo	Owens ND et al. (2016)	GSM1606302	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF8 (4hpf) - ClutchA	RNA-Seq	NF8	embryo	Owens ND et al. (2016)	GSM1606183	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (6.5hpf) - ClutchA rd	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606276	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF8 (4hpf) - ClutchA rd	RNA-Seq	NF8	embryo	Owens ND et al. (2016)	GSM1606317	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (17hpf) - ClutchA	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606209	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0hpf) - ClutchA	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606175	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23.5hpf) - ClutchA rd	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606313	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (10hpf) - ClutchA rd	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606283	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20hpf) - ClutchA rd	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606305	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (14hpf) - ClutchA	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606203	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF41 (53hpf) - ClutchA	RNA-Seq	NF41	embryo	Owens ND et al. (2016)	GSM1606251	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF41 (52hpf) - ClutchA	RNA-Seq	NF41	embryo	Owens ND et al. (2016)	GSM1606250,GSM1606269	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF5 (2hpf) - ClutchA	RNA-Seq	NF5	embryo	Owens ND et al. (2016)	GSM1606179	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0.5hpf) - ClutchA rd	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606273	RNA-Seq/Whole Embryo/fertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9.5hpf) - ClutchA rd	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606282	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12hpf) - ClutchA rd	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606288	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF16-17 (15hpf) - ClutchA rd	RNA-Seq	NF16	embryo	Owens ND et al. (2016)	GSM1606294	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF41 (51hpf) - ClutchA	RNA-Seq	NF41	embryo	Owens ND et al. (2016)	GSM1606249	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF6 (2.5hpf) - ClutchA rd	RNA-Seq	NF6	embryo	Owens ND et al. (2016)	GSM1606314	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7.5hpf) - ClutchA	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606190	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (13.5hpf) - ClutchA rd	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606291	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19hpf) - ClutchA	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606213	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF27 (24hpf) - ClutchA	RNA-Seq	NF27	embryo	Owens ND et al. (2016)	GSM1606223	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (16.5hpf) - ClutchA rd	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606298	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23hpf) - ClutchA rd	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606312	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (6hpf) - ClutchA rd	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606275	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF43 (65hpf) - ClutchA	RNA-Seq	NF43	embryo	Owens ND et al. (2016)	GSM1606263	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF40 (47hpf) - ClutchA	RNA-Seq	NF40	embryo	Owens ND et al. (2016)	GSM1606245	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (8.5hpf) - ClutchA rd	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606280	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7.5hpf) - ClutchA rd	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606278	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (10hpf) - ClutchA	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606195	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (17hpf) - ClutchA rd	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606299	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9.5hpf) - ClutchA	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606194	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (8.5hpf) - ClutchA	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606192	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF43 (63hpf) - ClutchA	RNA-Seq	NF43	embryo	Owens ND et al. (2016)	GSM1606261	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF41 (55hpf) - ClutchA	RNA-Seq	NF41	embryo	Owens ND et al. (2016)	GSM1606253	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF16-17 (15hpf) - ClutchA	RNA-Seq	NF16	embryo	Owens ND et al. (2016)	GSM1606205	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (22hpf) - ClutchA rd	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606310	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF35/36 (37hpf) - ClutchA	RNA-Seq	NF35/36	embryo	Owens ND et al. (2016)	GSM1606236	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12.5hpf) - ClutchA	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606200	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20.5hpf) - ClutchA	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606216	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (18hpf) - ClutchA rd	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606301	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (62hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606260	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF41 (54hpf) - ClutchA	RNA-Seq	NF41	embryo	Owens ND et al. (2016)	GSM1606252	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF2- (1hpf) - ClutchA	RNA-Seq	NF2-	embryo	Owens ND et al. (2016)	GSM1606177	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (13hpf) - ClutchA rd	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606290	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (58hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606256	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5.5hpf) - ClutchA	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606186	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF39 (45hpf) - ClutchA	RNA-Seq	NF39	embryo	Owens ND et al. (2016)	GSM1606243	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12hpf) - ClutchA	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606199	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (57hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606255	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF28 (28hpf) - ClutchA	RNA-Seq	NF28	embryo	Owens ND et al. (2016)	GSM1606227	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (10.5hpf) - ClutchA rd	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606285	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF5 (2hpf) - ClutchA rd	RNA-Seq	NF5	embryo	Owens ND et al. (2016)	GSM1606306	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21hpf) - ClutchA rd	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606308	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11hpf) - ClutchA	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606197	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0hpf) - ClutchA rd	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606271	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19.5hpf) - ClutchA rd	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606304	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (17.5hpf) - ClutchA rd	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606300	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11.5hpf) - ClutchA rd	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606287	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5hpf) - ClutchA rd	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606272	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21.5hpf) - ClutchA	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606218,GSM1606266	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20hpf) - ClutchA	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606215	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9hpf) - ClutchA rd	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606281	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3.5hpf) - ClutchA rd	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606316	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (13hpf) - ClutchA	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606201	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF37/38 (40hpf) - ClutchA	RNA-Seq	NF37/38	embryo	Owens ND et al. (2016)	GSM1606239	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (4.5hpf) - ClutchA	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606184	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF40 (49hpf) - ClutchA	RNA-Seq	NF40	embryo	Owens ND et al. (2016)	GSM1606247	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (10.5hpf) - ClutchA	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606196	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF3 (1.5hpf) - ClutchA	RNA-Seq	NF3	embryo	Owens ND et al. (2016)	GSM1606178	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF37/38 (39hpf) - ClutchA	RNA-Seq	NF37/38	embryo	Owens ND et al. (2016)	GSM1606238	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF33/34 (33hpf) - ClutchA	RNA-Seq	NF33/34	embryo	Owens ND et al. (2016)	GSM1606232,GSM1606268	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF33/34 (35hpf) - ClutchA	RNA-Seq	NF33/34	embryo	Owens ND et al. (2016)	GSM1606234	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (18hpf) - ClutchA	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606211	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF20 (16hpf) - ClutchA	RNA-Seq	NF20	embryo	Owens ND et al. (2016)	GSM1606207	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF27 (25hpf) - ClutchA	RNA-Seq	NF27	embryo	Owens ND et al. (2016)	GSM1606224	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF39 (41hpf) - ClutchA	RNA-Seq	NF39	embryo	Owens ND et al. (2016)	GSM1606240	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (6hpf) - ClutchA	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606187	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF11 (8hpf) - ClutchA	RNA-Seq	NF11	embryo	Owens ND et al. (2016)	GSM1606191	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (59hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606257	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19.5hpf) - ClutchA	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606214	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7hpf) - ClutchA	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606189	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF18-19 (15.5hpf) - ClutchA	RNA-Seq	NF18	embryo	Owens ND et al. (2016)	GSM1606206	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (61hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606259	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3hpf) - ClutchA rd	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606315	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5hpf) - ClutchA	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606185	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF32 (31hpf) - ClutchA	RNA-Seq	NF32	embryo	Owens ND et al. (2016)	GSM1606230	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF43 (66hpf) - ClutchA	RNA-Seq	NF43	embryo	Owens ND et al. (2016)	GSM1606264	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9hpf) - ClutchA	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606193	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3hpf) - ClutchA	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606181	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF35/36 (36hpf) - ClutchA	RNA-Seq	NF35/36	embryo	Owens ND et al. (2016)	GSM1606235	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20.5hpf) - ClutchA rd	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606307	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19hpf) - ClutchA rd	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606303	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0.5hpf) - ClutchA	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606176	RNA-Seq/Whole Embryo/fertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23hpf) - ClutchA	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606221	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF20 (16hpf) - ClutchA rd	RNA-Seq	NF20	embryo	Owens ND et al. (2016)	GSM1606297	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF37/38 (38hpf) - ClutchA	RNA-Seq	NF37/38	embryo	Owens ND et al. (2016)	GSM1606237	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (22.5hpf) - ClutchA rd	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606311	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7hpf) - ClutchA rd	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606277	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12.5hpf) - ClutchA rd	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606289	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (22.5hpf) - ClutchA	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606220	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5.5hpf) - ClutchA rd	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606274	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (13.5hpf) - ClutchA	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606202	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (22hpf) - ClutchA	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606219	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF27 (26hpf) - ClutchA	RNA-Seq	NF27	embryo	Owens ND et al. (2016)	GSM1606225	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF42 (60hpf) - ClutchA	RNA-Seq	NF42	embryo	Owens ND et al. (2016)	GSM1606258	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF3 (1.5hpf) - ClutchA rd	RNA-Seq	NF3	embryo	Owens ND et al. (2016)	GSM1606295	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23.5hpf) - ClutchA	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606222	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0.5hpf) - ClutchB	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606320	RNA-Seq/Whole Embryo/fertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF1 (0hpf) - ClutchB	RNA-Seq	NF1	embryo	Owens ND et al. (2016)	GSM1606319	RNA-Seq/Embryonic Tissues/fertilized egg	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF3 (1.5hpf) - ClutchB	RNA-Seq	NF3	embryo	Owens ND et al. (2016)	GSM1606322	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (10.5hpf) - ClutchB	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606340	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (10hpf) - ClutchB	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606339	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11.5hpf) - ClutchB	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606342	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12.5 (11hpf) - ClutchB	RNA-Seq	NF12.5	embryo	Owens ND et al. (2016)	GSM1606341	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12.5hpf) - ClutchB	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606344	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (12hpf) - ClutchB	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606343	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (13.5hpf) - ClutchB	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606346	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF13 (13hpf) - ClutchB	RNA-Seq	NF13	embryo	Owens ND et al. (2016)	GSM1606345	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF15 (14.5hpf) - ClutchB	RNA-Seq	NF15	embryo	Owens ND et al. (2016)	GSM1606348	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF14 (14hpf) - ClutchB	RNA-Seq	NF14	embryo	Owens ND et al. (2016)	GSM1606347	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF18-19 (15.5hpf) - ClutchB	RNA-Seq	NF18	embryo	Owens ND et al. (2016)	GSM1606350	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF16-17 (15hpf) - ClutchB	RNA-Seq	NF16	embryo	Owens ND et al. (2016)	GSM1606349	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (16.5hpf) - ClutchB	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606352	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF20 (16hpf) - ClutchB	RNA-Seq	NF20	embryo	Owens ND et al. (2016)	GSM1606351	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (17.5hpf) - ClutchB	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606354	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF21 (17hpf) - ClutchB	RNA-Seq	NF21	embryo	Owens ND et al. (2016)	GSM1606353	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF23 (18.5hpf) - ClutchB	RNA-Seq	NF23	embryo	Owens ND et al. (2016)	GSM1606356	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF22 (18hpf) - ClutchB	RNA-Seq	NF22	embryo	Owens ND et al. (2016)	GSM1606355	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19.5hpf) - ClutchB	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606358	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (19hpf) - ClutchB	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606357	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF2- (1hpf) - ClutchB	RNA-Seq	NF2-	embryo	Owens ND et al. (2016)	GSM1606321	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF6 (2.5hpf) - ClutchB	RNA-Seq	NF6	embryo	Owens ND et al. (2016)	GSM1606324	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20.5hpf) - ClutchB	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606360	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF24 (20hpf) - ClutchB	RNA-Seq	NF24	embryo	Owens ND et al. (2016)	GSM1606359	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21.5hpf) - ClutchB	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606362	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (21hpf) - ClutchB	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606361	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (22.5hpf) - ClutchB	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606364	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF25 (22hpf) - ClutchB	RNA-Seq	NF25	embryo	Owens ND et al. (2016)	GSM1606363	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23.5hpf) - ClutchB	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606366	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF26 (23hpf) - ClutchB	RNA-Seq	NF26	embryo	Owens ND et al. (2016)	GSM1606365	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF27 (24hpf) - ClutchB	RNA-Seq	NF27	embryo	Owens ND et al. (2016)	GSM1606367	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF5 (2hpf) - ClutchB	RNA-Seq	NF5	embryo	Owens ND et al. (2016)	GSM1606323	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3.5hpf) - ClutchB	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606326	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF7 (3hpf) - ClutchB	RNA-Seq	NF7	embryo	Owens ND et al. (2016)	GSM1606325	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (4.5hpf) - ClutchB	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606328	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF8 (4hpf) - ClutchB	RNA-Seq	NF8	embryo	Owens ND et al. (2016)	GSM1606327	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5.5hpf) - ClutchB	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606330	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (5hpf) - ClutchB	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606329	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (6.5hpf) - ClutchB	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606332	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF9 (6hpf) - ClutchB	RNA-Seq	NF9	embryo	Owens ND et al. (2016)	GSM1606331	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9hpf) - ClutchB	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606337	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (9.5hpf) - ClutchB	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606338	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF12 (8.5hpf) - ClutchB	RNA-Seq	NF12	embryo	Owens ND et al. (2016)	GSM1606336	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7.5hpf) - ClutchB	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606334	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF10 (7hpf) - ClutchB	RNA-Seq	NF10	embryo	Owens ND et al. (2016)	GSM1606333	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
65785	Mike Gilchrist	Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development	Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack	Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha	High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.	26774488	51804	SRP053406	WE - NF11 (8hpf) - ClutchB	RNA-Seq	NF11	embryo	Owens ND et al. (2016)	GSM1606335	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE65785/XENTR_9.1/RNA-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659911	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974230	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659927	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K36me3 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659918	ChIP-Seq/Epigenetic/H3K36me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659907	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659902	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	WE + alpha amanitin - NF11	RNA-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974231	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	WE + alpha amanitin - NF11	RNA-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974231	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me1 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659900	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659912	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K36me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659916	ChIP-Seq/Epigenetic/H3K36me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me2 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659942	ChIP-Seq/Epigenetic/H3K9me2	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659935,GSM1974225	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659935,GSM1974225	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659908	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me2 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659941	ChIP-Seq/Epigenetic/H3K9me2	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K36me3 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659915	ChIP-Seq/Epigenetic/H3K36me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659949	ChIP-Seq/Epigenetic/H3K9me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	WE - NF11	RNA-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974232	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/RNA-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659930	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659920	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659926	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF8	ChIP-Seq	NF8	embryo	Hontelez S et al. (2015)	GSM1659901	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659904,GSM1974223	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659904,GSM1974223	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K36me3 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659917	ChIP-Seq/Epigenetic/H3K36me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659936,GSM1974226	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	WE - NF10.5	Bisulfite-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1677167	Bisulfite-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659905,GSM1974224	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me3 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659945	ChIP-Seq/Epigenetic/H3K9me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659925	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659921	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659924	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659913	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me2 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659940	ChIP-Seq/Epigenetic/H3K9me2	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659922,GSM1974227	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659922,GSM1974227	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K36me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659919	ChIP-Seq/Epigenetic/H3K36me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	input WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659955	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me2 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659943	ChIP-Seq/Epigenetic/H3K9me2	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me2 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659944	ChIP-Seq/Epigenetic/H3K9me2	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	ep300 WE - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1659923,GSM1974228	ChIP-Seq/Transcription Factor/ep300	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659906	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H4K20me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659954	ChIP-Seq/Epigenetic/H4K20me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H4K20me3 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659950	ChIP-Seq/Epigenetic/H4K20me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF8	ChIP-Seq	NF8	embryo	Hontelez S et al. (2015)	GSM1659909	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659929	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	WE - NF9	Bisulfite-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1875285	Bisulfite-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/Bisulfite-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659933	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF8	ChIP-Seq	NF8	embryo	Hontelez S et al. (2015)	GSM1659932	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H4K20me3 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659952	ChIP-Seq/Epigenetic/H4K20me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me3 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659948	ChIP-Seq/Epigenetic/H3K9me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659938	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659910	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659934	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me1 WE - NF9	ChIP-Seq	NF9	embryo	Hontelez S et al. (2015)	GSM1659896	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me3 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659947	ChIP-Seq/Epigenetic/H3K9me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9ac WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659914	ChIP-Seq/Epigenetic/H3K9ac	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659931	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659937	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974229	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE + alpha amanitin - NF11	ChIP-Seq	NF11	embryo	Hontelez S et al. (2015)	GSM1974229	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H4K20me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659951	ChIP-Seq/Epigenetic/H4K20me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me1 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659899	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	Pol II WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659928	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659903	ChIP-Seq/Epigenetic/H3K4me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me1 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659897	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H4K20me3 WE - NF16	ChIP-Seq	NF16	embryo	Hontelez S et al. (2015)	GSM1659953	ChIP-Seq/Epigenetic/H4K20me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K4me1 WE - NF12	ChIP-Seq	NF12	embryo	Hontelez S et al. (2015)	GSM1659898	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K9me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Hontelez S et al. (2015)	GSM1659946	ChIP-Seq/Epigenetic/H3K9me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
67974	Saartje Hontelez	Embryonic transcription is controlled by maternally defined chromatin state	During development histone modifying enzymes are required for cell identity and lineage commitment, however little is known about the regulatory origi	Saartje Hontelez, GertJan Veenstra	We have performed ChIP-sequencing of eight histone modifications, RNA polymerase II (RNAPII) and the enhancer protein p300 at five stages of development: blastula (st. 9), gastrula (st. 10.5, 12.5), neurula (st. 16) and tailbud (st. 30). These experiments allow identification of enhancers (H3K4me1, p300), promoters (H3K4me3, H3K9ac), transcribed regions (H3K36me3, RNAPII) and repressed and heterochromatic domains (H3K27me3, H3K9me2, H3K9me3, H4K20me3). In addition we generated pre-MBT (st. 8) maps for three histone modifications (H3K4me3, H3K9ac, H3K27me3) and single-base resolution DNA methylome maps using whole genome bisulfite sequencing of blastula and gastrula (st. 9 and 10.5) embryos. To determine the maternal and zygotic contributions to chromatin state, we used alpha-amanitin to block embryonic transcription. Fertilised eggs were injected with 2.3 nl of 2.67 ng/ul alpha-amanitin and developed until the control embryos reached mid-gastrulation. Alpha-amanitin and control embryos were used for RNA-seq and ChIP-seq of RNAPII, H3K4me3, H3K27me3 and p300. For all ChIP-seq samples of the epigenome reference maps and RNAPII ChIP-seq samples of the α-amanitin experiments three biological replicates of different chromatin isolations of 45 embryos were pooled. Two biological replicates for H3K4me3 (α-amanitin injected: resp. 90 and 56 embryo equivalents (eeq); control: resp. 45 and 67 eeq), H3K27me3 (α-amanitin injected: resp. 90 and 180 eeq; control: resp. 45 and 202 eeq) and p300 (α-amanitin injected: resp. 112 and 56 eeq; control: resp. 112 and 67 eeq) ChIP-seq samples of the α-amanitin experiments were generated. For RNA-seq samples of the α-amanitin experiments RNA from 5 embryos from one biological replicate was isolated and depleted of ribosomal RNA	26679111	51677	SRP057395	H3K27me3 WE - NF29/30	ChIP-Seq	NF29/30	embryo	Hontelez S et al. (2015)	GSM1659939	ChIP-Seq/Epigenetic/H3K27me3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE67974/XENTR_9.1/ChIP-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	WE - NF29/30	Bisulfite-Seq	NF29/30	embryo	Bogdanović O et al. (2016)	GSM1662791	Bisulfite-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	WE - NF12	Bisulfite-Seq	NF12	embryo	Bogdanović O et al. (2016)	GSM1662788	Bisulfite-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	WE - NF9	Bisulfite-Seq	NF9	embryo	Bogdanović O et al. (2016)	GSM1662787	Bisulfite-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	WE - NF29/30	Bisulfite-Seq	NF29/30	embryo	Bogdanović O et al. (2016)	GSM1662789	Bisulfite-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	WE - NF43	Bisulfite-Seq	NF43	embryo	Bogdanović O et al. (2016)	GSM1662790	Bisulfite-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Readme.txt
68087	Ozren Bogdanovic	Active DNA demethylation at enhancers during the vertebrate phylotypic period	The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the e	Ozren Bogdanovic, Ryan Lister	MethylC-Seq in zebrafish embryos, MethylC-seq in Xenopus tropicalis embryos, MethylC-seq in mouse embryos, MethylC-seq in zebrafish tissues, MethylC-seq in Xenopus tropicalis tissues, TAB-seq in zebrafish embryos, TAB-seq in Xenopus tropicalis embryos, TAB-seq in mouse embryos, RNA-seq in zebrafish embryos, RNA-seq in mouse embryos	26928226	51922	SRP057505	brain - adult	Bisulfite-Seq	adult 	brain	Bogdanović O et al. (2016)	GSM1859499	Bisulfite-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68087/XENTR_9.1/Bisulfite-Seq/Readme.txt
68972	Xiaopeng Ma	The identification of differentially expressed genes between animal and vegetal blastomeres in Xenopus laevis	To identify asymmetrically localized maternal mRNAs along the animal-vegetal axis in cleavage Xenopus embryos, we isolated animal and vegetal blastome	Xiaopeng Ma, Guanni Sun, Zhirui Hu, Zheying Min, Xiaohua Yan, Zhenpo Guan, Hanxia Su, Yu Fu, YeGuang Chen, Michael Zhang, Qinghua Tao, Wei Wu	RNAseq of animal and vegetal blastomeres with 2 biological replicates	26013826	50741	SRP058428	vegetal blastomere - NF4	RNA-Seq	NF4	vegetal blastomere	Sun G et al. (2015)	GSM1689109,GSM1689110	RNA-Seq/Embryonic Tissues/Cleavage NF2- to NF6.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq/Readme.txt
68972	Xiaopeng Ma	The identification of differentially expressed genes between animal and vegetal blastomeres in Xenopus laevis	To identify asymmetrically localized maternal mRNAs along the animal-vegetal axis in cleavage Xenopus embryos, we isolated animal and vegetal blastome	Xiaopeng Ma, Guanni Sun, Zhirui Hu, Zheying Min, Xiaohua Yan, Zhenpo Guan, Hanxia Su, Yu Fu, YeGuang Chen, Michael Zhang, Qinghua Tao, Wei Wu	RNAseq of animal and vegetal blastomeres with 2 biological replicates	26013826	50741	SRP058428	animal blastomere - NF4	RNA-Seq	NF4	animal blastomere	Sun G et al. (2015)	GSM1689111,GSM1689112	RNA-Seq/Embryonic Tissues/Cleavage NF2- to NF6.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE68972/XENLA_9.2/RNA-Seq/Readme.txt
69701	Daniel Ramire-Gordillo	RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM® genes for hereditary disorders of hearing and balance	Purpose: To identify orthologous genes in Xenopus that are implicated in deafness and vestibular disorders in humans and to compare RNA-Seq and microa	Daniel Ramire-Gordillo, Daniel Ramirez-Gordillo, TuShun Powers, Casilda Trujillo-Provencio, Jennifer van Velkinburgh, Faye Schilkey, Elba Serrano	Inner ear RNA from X. laevis larval stages 56-58 was isolated and shipped to the National Center for Genome Resources, for Illumina-Solexa sequencing or to the Massachusetts Institute of Technology BioMicro Center for microarray analysis with the Affymetrix GeneChip® X. laevis Genome 2.0 Array. RNA-Sequencing was completed using the Illumina-Solexa platform for sequencing by synthesis.  Short-insert paired end (SIPE) libraries were prepared from total RNA according to Illumina’s mRNA-Seq Sample Prep Protocol v2.0 (Illumina, San Diego, CA, USA).  The resultant double-stranded cDNA concentration was measured on a NanoDrop spectrophotometer, and size and purity were determined on the 2100 Bioanalyzer using a DNA 1000 Nano kit. The cDNA libraries were cluster amplified on Illumina flowcells, sequenced on the GAII Sequencer as 36-cycle single-end reads, and processed using Illumina software v1.0.  Illumina reads were aligned to the X. tropicalis genome using the algorithm for genomic mapping and alignment program (GMAP) and Alpheus® Sequence Variant Detection System v3.1.	26582541	51592	SRP059283	inner ear - NF56-58	RNA-Seq	NF56	inner ear	Ramírez-Gordillo D et al. (2015)	GSM1707665	RNA-Seq/Embryonic Tissues/NF56	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE69701/XENLA_9.2/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + cdx1 MO + Cdx2 MO + Cdx4 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825049,GSM1825050,GSM1825051	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + cdx1 MO + Cdx2 MO + Cdx4 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825049,GSM1825050,GSM1825051	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + Cdx4 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825046,GSM1825047,GSM1825048	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + Cdx4 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825046,GSM1825047,GSM1825048	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + cdx1 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825040,GSM1825041,GSM1825042	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + cdx1 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825040,GSM1825041,GSM1825042	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + Cdx2 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825043,GSM1825044,GSM1825045	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + Cdx2 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825043,GSM1825044,GSM1825045	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825055,GSM1825056,GSM1825057	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + hbg1 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825052,GSM1825053,GSM1825054	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Readme.txt
71006	Ferdinand Marlétaz	Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution	We examined the degree of regulatory and functional overlap between the three vertebrate Cdx genes using single and triple morpholino knock-down in Xe	Ferdinand Marlétaz, Harv Isaacs, Peter Holland	Stage 14 (early neurula) embryos derived from eggs injected with morpholinos against Cdx1, Cdx2, Cdx4 and a mixture of all three plus corresponding uninjected embryos. All in triplicates.	26231746	51076	SRP061238	WE + hbg1 MO - NF14	RNA-Seq	NF14	embryo	Marlétaz F et al. (2015)	GSM1825052,GSM1825053,GSM1825054	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE71006/XENTR_9.1/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + wnt8a MO + wnt8a - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867405,GSM1867409,GSM1867413	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + wnt8a MO + wnt8a - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867405,GSM1867409,GSM1867413	Manipulations/mRNA Injection	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + wnt8a MO + wnt8a - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867405,GSM1867409,GSM1867413	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	input WE - NF10.25	ChIP-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867401	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + hbg1 MO - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867403,GSM1867407,GSM1867411	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + hbg1 MO - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867403,GSM1867407,GSM1867411	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867402,GSM1867406,GSM1867410	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + wnt8a MO - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867404,GSM1867408,GSM1867412	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	WE + wnt8a MO - NF10.25	RNA-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867404,GSM1867408,GSM1867412	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/RNA-Seq/Readme.txt
72657	Stefan Hoppler	Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment	The aim of our study is to identify direct target genes of Wnt/β-catenin signaling operating in gastrula-stage X. tropicalis embryos. We characterize	Stefan Hoppler, Yukio Nakamura, Eduardo Alves	For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.	27068107	52077	SRP063109	beta Catenin WE - NF10.25	ChIP-Seq	NF10.25	embryo	Nakamura Y et al. (2016)	GSM1867400	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE72657/XENTR_9.1/ChIP-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	eye - adult	RNA-Seq	adult 	eye	Session AM et al. (2016)	GSM1893240,GSM1893254	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	intestine - adult	RNA-Seq	adult 	intestine	Session AM et al. (2016)	GSM1893242,GSM1893256	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	muscle - adult	RNA-Seq	adult 	muscle	Session AM et al. (2016)	GSM1893246,GSM1893260	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	pancreas - adult	RNA-Seq	adult 	pancreas	Session AM et al. (2016)	GSM1893248,GSM1893262	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	heart - adult	RNA-Seq	adult 	heart	Session AM et al. (2016)	GSM1893241,GSM1893255	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	testis - adult	RNA-Seq	adult 	testis	Session AM et al. (2016)	GSM1893252,GSM1893266	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	kidney - adult	RNA-Seq	adult 	kidney	Session AM et al. (2016)	GSM1893243,GSM1893257	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	lung - adult	RNA-Seq	adult 	lung	Session AM et al. (2016)	GSM1893245,GSM1893259	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	ovary - adult	RNA-Seq	adult 	ovary	Session AM et al. (2016)	GSM1893247,GSM1893261	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	brain - adult	RNA-Seq	adult 	brain	Session AM et al. (2016)	GSM1893239,GSM1893253	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	spleen - adult	RNA-Seq	adult 	spleen	Session AM et al. (2016)	GSM1893250,GSM1893264	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	stomach - adult	RNA-Seq	adult 	stomach	Session AM et al. (2016)	GSM1893251,GSM1893265	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	liver - adult	RNA-Seq	adult 	liver	Session AM et al. (2016)	GSM1893244,GSM1893258	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73419	Taejoon Kwon	Tissue gene expression of Xenopus laevis J strain [tissue]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. Th	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)	27762356	52612	SRP064167	skin - adult	RNA-Seq	adult 	skin	Session AM et al. (2016)	GSM1893249,GSM1893263	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73419/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF25	RNA-Seq	NF25	embryo	Session AM et al. (2016)	GSM1893590,GSM1893604	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF8	RNA-Seq	NF8	embryo	Session AM et al. (2016)	GSM1893584,GSM1893598,GSM1893608	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF10-10.5	RNA-Seq	NF10	embryo	Session AM et al. (2016)	GSM1893586,GSM1893600,GSM1893609	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF9	RNA-Seq	NF9	embryo	Session AM et al. (2016)	GSM1893585,GSM1893599	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF35/36	RNA-Seq	NF35/36	embryo	Session AM et al. (2016)	GSM1893592,GSM1893606,GSM1893610	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	oocyte - oocyte V-VI	RNA-Seq	oocyte  V	oocyte	Session AM et al. (2016)	GSM1893597	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	oocyte - oocyte I-II	RNA-Seq	oocyte  I	oocyte	Session AM et al. (2016)	GSM1893595	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF15	RNA-Seq	NF15	embryo	Session AM et al. (2016)	GSM1893588,GSM1893602	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	oocyte - oocyte III-IV	RNA-Seq	oocyte  III	oocyte	Session AM et al. (2016)	GSM1893596	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF12	RNA-Seq	NF12	embryo	Session AM et al. (2016)	GSM1893587,GSM1893601	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	egg - unfertilized egg	RNA-Seq	egg	egg	Session AM et al. (2016)	GSM1893583,GSM1893594	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF20	RNA-Seq	NF20	embryo	Session AM et al. (2016)	GSM1893589,GSM1893603	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF29/30	RNA-Seq	NF29/30	embryo	Session AM et al. (2016)	GSM1893591,GSM1893605	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73430	Taejoon Kwon	Developmental gene expression of Xenopus laevis J strain [stage]	Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genom	Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira	Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)	27762356	52612	SRP064186	WE - NF40	RNA-Seq	NF40	embryo	Session AM et al. (2016)	GSM1893593,GSM1893607	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73430/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF6	RNA-Seq	NF6	embryo	Peshkin L et al. (2015)	GSM1904665	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF2	RNA-Seq	NF2	embryo	Peshkin L et al. (2015)	GSM1904664	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF14	RNA-Seq	NF14	embryo	Peshkin L et al. (2015)	GSM1904673	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF20	RNA-Seq	NF20	embryo	Peshkin L et al. (2015)	GSM1904676	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - mature egg	RNA-Seq	mature egg 	embryo	Peshkin L et al. (2015)	GSM1904663	RNA-Seq/Whole Embryo/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF18	RNA-Seq	NF18	embryo	Peshkin L et al. (2015)	GSM1904675	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF12	RNA-Seq	NF12	embryo	Peshkin L et al. (2015)	GSM1904672	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF33/34	RNA-Seq	NF33/34	embryo	Peshkin L et al. (2015)	GSM1904680	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF29/30	RNA-Seq	NF29/30	embryo	Peshkin L et al. (2015)	GSM1904679	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF8	RNA-Seq	NF8	embryo	Peshkin L et al. (2015)	GSM1904668,GSM1904669	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF26	RNA-Seq	NF26	embryo	Peshkin L et al. (2015)	GSM1904678	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF23	RNA-Seq	NF23	embryo	Peshkin L et al. (2015)	GSM1904677	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF16	RNA-Seq	NF16	embryo	Peshkin L et al. (2015)	GSM1904674	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF10	RNA-Seq	NF10	embryo	Peshkin L et al. (2015)	GSM1904671	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF6.5	RNA-Seq	NF6.5	embryo	Peshkin L et al. (2015)	GSM1904666	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF9	RNA-Seq	NF9	embryo	Peshkin L et al. (2015)	GSM1904670	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73870	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by Poly(A) extraction using Dynabeads (invitrogen) and the EpiCenter ScripSeq kit V1 using 50-300ng input RNA, and 10 cycles amplification.	26555057	51556	SRP064629	WE - NF7	RNA-Seq	NF7	embryo	Peshkin L et al. (2015)	GSM1904667	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73870/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF16	RNA-Seq	NF16	embryo	Peshkin L et al. (2015)	GSM1905648	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF29/30	RNA-Seq	NF29/30	embryo	Peshkin L et al. (2015)	GSM1905653	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF12	RNA-Seq	NF12	embryo	Peshkin L et al. (2015)	GSM1905646	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF20	RNA-Seq	NF20	embryo	Peshkin L et al. (2015)	GSM1905650	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF33/34	RNA-Seq	NF33/34	embryo	Peshkin L et al. (2015)	GSM1905654	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF6	RNA-Seq	NF6	embryo	Peshkin L et al. (2015)	GSM1905639	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF6.5	RNA-Seq	NF6.5	embryo	Peshkin L et al. (2015)	GSM1905640	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF26	RNA-Seq	NF26	embryo	Peshkin L et al. (2015)	GSM1905652	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF23	RNA-Seq	NF23	embryo	Peshkin L et al. (2015)	GSM1905651	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF14	RNA-Seq	NF14	embryo	Peshkin L et al. (2015)	GSM1905647	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF7	RNA-Seq	NF7	embryo	Peshkin L et al. (2015)	GSM1905641	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF2	RNA-Seq	NF2	embryo	Peshkin L et al. (2015)	GSM1905638	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF8	RNA-Seq	NF8	embryo	Peshkin L et al. (2015)	GSM1905642,GSM1905643	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF10	RNA-Seq	NF10	embryo	Peshkin L et al. (2015)	GSM1905645	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - mature egg	RNA-Seq	mature egg 	embryo	Peshkin L et al. (2015)	GSM1905637	RNA-Seq/Whole Embryo/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF18	RNA-Seq	NF18	embryo	Peshkin L et al. (2015)	GSM1905649	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
73904	Esther Pearl	On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]	A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs	Esther Pearl, Leonid Peshkin, Martin Wuhr, Esther Pearl, Wilhelm Haas, Robert Freeman, John Gerhart, Allon Klein, Marko Horb, Steven Gygi, Marc Kirscher	mRNA from 18 samples each at a different developmental stage. Libraries were constructed using RNA enriched for mRNA by rRNA depletion using the EpiCenter RiboZero kit and the EpiCenter ScripSeq kit V2 using 50ng input RNA, and 12 cycles amplification.	26555057	51556	SRP064686	WE - NF9	RNA-Seq	NF9	embryo	Peshkin L et al. (2015)	GSM1905644	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE73904/XENLA_9.2/RNA-Seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	m6A** testis - adult	MeDIP-seq	adult 	testis	Koziol MJ et al. (2016)	GSM1912905,GSM1912906	MeDIP-seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	m6A adipose tissue - adult	MeDIP-seq	adult 	adipose tissue	Koziol MJ et al. (2016)	GSM1912891,GSM1912892	MeDIP-seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	Rabbit IgG testis - adult	MeDIP-seq	adult 	testis	Koziol MJ et al. (2016)	GSM1912899,GSM1912900	MeDIP-seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	testis - adult	MeDIP-seq	adult 	testis	Koziol MJ et al. (2016)	GSM1912897,GSM1912898	MeDIP-seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	oviduct - adult	MeDIP-seq	adult 	oviduct	Koziol MJ et al. (2016)	GSM1912893,GSM1912894	MeDIP-seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	m6A* testis - adult	MeDIP-seq	adult 	testis	Koziol MJ et al. (2016)	GSM1912903,GSM1912904	MeDIP-seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	m6A testis - adult	MeDIP-seq	adult 	testis	Koziol MJ et al. (2016)	GSM1912901,GSM1912902	MeDIP-seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	adipose tissue - adult	MeDIP-seq	adult 	adipose tissue	Koziol MJ et al. (2016)	GSM1912889,GSM1912890	MeDIP-seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Readme.txt
74184	Charles Bradshaw	Methylome analysis of deoxyadenosines in higher eukaryotes	Here, we report that we detected N-6-methyl-deoxyadenosine (dA6m) not only in frog DNA, but also in other species including mouse and humans. Our meth	Charles Bradshaw, Magdalena Koziol, Charles Bradshaw, George Allen, Ana Costa, Christian Frezza, John Gurdon	Determining regions of deoxyadenosine methylation in  M. musculus kidney and X. laevis fat, oviduct and testes	26689968	51669	SRP065025	m6A oviduct - adult	MeDIP-seq	adult 	oviduct	Koziol MJ et al. (2016)	GSM1912895,GSM1912896	MeDIP-seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74184/XENLA_9.2/MeDIP-seq/Readme.txt
74470	Leonid Peshkin	Transcriptomic Insights into Genetic Diversity of  Protein-Coding Genes in X. laevis	We characterize the genetic diversity of Xenopus laevis strains using allele-specific RNA-seq data analysis and provide a catalogue of coding variatio	Leonid Peshkin, Virginia Savova, Esther Pearl, Elvan Boke, Marko Horb, Sasha Gimelbrant	We successfully performed natural mating of the two Xenopus strains: two reciprocal (BxJ, JxB) and two straight self (JxJ, BxB) crosses. We then collected tadpoles at a single developmental timepoint (stage NF 42), pooled ten tadpoles per cross, and isolated RNA from each pool. After RiboZero treatment, we constructed Illumina libraries, and performed RNAseq on HiSeq 2000, resulting in approximately 30 to 47 million reads per library with paired-end 100 base reads.	28283406	53166	SRP065480	WT (Albino) - NF42	RNA-Seq	NF42	embryo	Savova V et al. (2017)	GSM1921263	None	laevis	XL92	XENLA_9.2	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq/Readme.txt
74470	Leonid Peshkin	Transcriptomic Insights into Genetic Diversity of  Protein-Coding Genes in X. laevis	We characterize the genetic diversity of Xenopus laevis strains using allele-specific RNA-seq data analysis and provide a catalogue of coding variatio	Leonid Peshkin, Virginia Savova, Esther Pearl, Elvan Boke, Marko Horb, Sasha Gimelbrant	We successfully performed natural mating of the two Xenopus strains: two reciprocal (BxJ, JxB) and two straight self (JxJ, BxB) crosses. We then collected tadpoles at a single developmental timepoint (stage NF 42), pooled ten tadpoles per cross, and isolated RNA from each pool. After RiboZero treatment, we constructed Illumina libraries, and performed RNAseq on HiSeq 2000, resulting in approximately 30 to 47 million reads per library with paired-end 100 base reads.	28283406	53166	SRP065480	WT - NF42	RNA-Seq	NF42	embryo	Savova V et al. (2017)	GSM1921264	None	laevis	XL92	XENLA_9.2	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74470/XENLA_9.2/RNA-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 1	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937543	WTTS-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE (female) - adult	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937550,GSM1937551	WTTS-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF28	WTTS-Seq	NF28	embryo	Zhou X et al. (2016)	GSM1937560,GSM1937561	WTTS-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 7	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937549	WTTS-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 6	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937548	WTTS-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 3	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937545	WTTS-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 5	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937547	WTTS-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF6	RNA-Seq	NF6	embryo	Zhou X et al. (2016)	GSM1937563,GSM1937564	RNA-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF15	WTTS-Seq	NF15	embryo	Zhou X et al. (2016)	GSM1937558,GSM1937559	WTTS-Seq/Whole Embryo/Neurula NF13 to NF21	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF11	RNA-Seq	NF11	embryo	Zhou X et al. (2016)	GSM1937567,GSM1937568	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 2	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937544	WTTS-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF8	RNA-Seq	NF8	embryo	Zhou X et al. (2016)	GSM1937565,GSM1937566	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF11 (WTTS-Seq)	WTTS-Seq	NF11	embryo	Zhou X et al. (2016)	GSM1937556,GSM1937557	WTTS-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult	RNA-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937562	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/RNA-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF8 (WTTS-Seq)	WTTS-Seq	NF8	embryo	Zhou X et al. (2016)	GSM1937554,GSM1937555	WTTS-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - adult - Trial 4	WTTS-Seq	adult 	whole organism	Zhou X et al. (2016)	GSM1937546	WTTS-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
74919	Zhihua Jiang	Whole transcriptome target sequencing: profiling  gene expression and alternative polyadenylation with one pipeline.	We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This meth	Zhihua Jiang, Xiang Zhou, Rui Li, Jennifer Michal, Richard Harland	A pooled total RNA sample derived from three male and three female adult frogs was used in seven trials to develop the WTTS assay.  The same sample was sequenced using RNA-seq as control. Technical replicates of the same female adult frog were analyzed using the finalized WTTS library preparation method.  Biological replicates, which included 10 embryo pools collected from two families at stages 6, 8, 11, 15 and 28 were subsequently analyzed to validate the finalized WTTS method.  Six embryo samples collected at stages of 6, 8 and 11 were also sequenced using RNA-seq.  Therefore, this submission involved a total of 26 libraries.	27098915	52200	SRP066064	WE - NF6 (WTTS-Seq)	WTTS-Seq	NF6	embryo	Zhou X et al. (2016)	GSM1937552,GSM1937553	WTTS-Seq/Whole Embryo/Cleavage NF2- to NF6.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE74919/XENTR_9.1/WTTS-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K27me3 spermatid - adult (1)	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944504	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K4me2 spermatozoon - adult	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944474,GSM1944476,GSM1944478	ChIP-Seq/Epigenetic/H3K4me2	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K4me3 spermatozoon - adult	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944479,GSM1944481,GSM1944483	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944440,GSM1944442,GSM1944444,GSM1944446	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944440,GSM1944442,GSM1944444,GSM1944446	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944440,GSM1944442,GSM1944444,GSM1944446	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatid - adult	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944490,GSM1944492,GSM1944494	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	spermatid - adult (MBD-Seq)	MBD-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944470,GSM1944471,GSM1944472	MBD-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	spermatid - adult (MNase-Seq)	MNase-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944458,GSM1944459,GSM1944460	Chromatin Accessibility/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K27me3 spermatid - adult (2)	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944503,GSM1944505	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatozoon - adult	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944473,GSM1944475,GSM1944477	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatozoon - adult (MBD-Seq)	MBD-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944461,GSM1944462,GSM1944463	MBD-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	spermatozoon - adult (MBD-Seq)	MBD-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944464,GSM1944465,GSM1944466	MBD-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K27me3 spermatozoon - adult (1)	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944488	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatozoon - adult H3K4me3	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944480,GSM1944482	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatid - adult H3K4me3	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944496	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatozoon - NF10.5-11.5 (PE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944400,GSM1944412,GSM1944413	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatozoon - NF10.5-11.5 (PE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944400,GSM1944412,GSM1944413	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944418,GSM1944420,GSM1944421,GSM1944423	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944418,GSM1944420,GSM1944421,GSM1944423	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944418,GSM1944420,GSM1944421,GSM1944423	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K4me3 spermatid - adult (1)	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944497	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K4me3 spermatid - adult (2)	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944498,GSM1944499	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944425,GSM1944427,GSM1944430,GSM1944432,GSM1944433,GSM1944434,GSM1944436	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944425,GSM1944427,GSM1944430,GSM1944432,GSM1944433,GSM1944434,GSM1944436	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944425,GSM1944427,GSM1944430,GSM1944432,GSM1944433,GSM1944434,GSM1944436	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatozoon - NF10.5-11.5 (SE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944402,GSM1944404,GSM1944406,GSM1944408	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatozoon - NF10.5-11.5 (SE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944402,GSM1944404,GSM1944406,GSM1944408	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatid - NF10.5-11.5 (PE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944401,GSM1944410,GSM1944411	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatid - NF10.5-11.5 (PE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944401,GSM1944410,GSM1944411	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	spermatozoon - adult (MNase-Seq)	MNase-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944455,GSM1944456,GSM1944457	Chromatin Accessibility/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MNase-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944417,GSM1944419,GSM1944422,GSM1944424	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944417,GSM1944419,GSM1944422,GSM1944424	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm5b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944417,GSM1944419,GSM1944422,GSM1944424	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	spermatid - adult	RNA-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944414,GSM1944415,GSM1944416	RNA-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K27me3 spermatozoon - adult (2)	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944487,GSM1944489	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K9me3 spermatid - adult	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944500,GSM1944501,GSM1944502	ChIP-Seq/Epigenetic/H3K9me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatid - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944426,GSM1944428,GSM1944429,GSM1944431,GSM1944435,GSM1944437,GSM1944438,GSM1944449,GSM1944450,GSM1944451,GSM1944453	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatid - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944426,GSM1944428,GSM1944429,GSM1944431,GSM1944435,GSM1944437,GSM1944438,GSM1944449,GSM1944450,GSM1944451,GSM1944453	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + spermatid - NF10.5-11.5 (control)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944426,GSM1944428,GSM1944429,GSM1944431,GSM1944435,GSM1944437,GSM1944438,GSM1944449,GSM1944450,GSM1944451,GSM1944453	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K9me3 spermatozoon - adult	ChIP-Seq	adult 	spermatozoon	Teperek M et al. (2016)	GSM1944484,GSM1944485,GSM1944486	ChIP-Seq/Epigenetic/H3K9me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	H3K4me2 spermatid - adult	ChIP-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944491,GSM1944493,GSM1944495	ChIP-Seq/Epigenetic/H3K4me2	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/ChIP-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	input spermatid - adult (MBD-Seq)	MBD-Seq	adult 	spermatid	Teperek M et al. (2016)	GSM1944467,GSM1944468,GSM1944469	MBD-Seq/Adult Tissues	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/MBD-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatid - NF10.5-11.5 (SE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944403,GSM1944405,GSM1944407,GSM1944409	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + UV + spermatid - NF10.5-11.5 (SE)	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944403,GSM1944405,GSM1944407,GSM1944409	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944439,GSM1944441,GSM1944443,GSM1944445	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944439,GSM1944441,GSM1944443,GSM1944445	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatozoon - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944439,GSM1944441,GSM1944443,GSM1944445	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944447,GSM1944448,GSM1944452,GSM1944454	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944447,GSM1944448,GSM1944452,GSM1944454	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75164	Charles Bradshaw	Sperm is epigenetically programmed to regulate gene transcription in embryo	Using the frog Xenopus laevis as a model system we profile epigenetic features of sperm and spermatid to study how they relate to gene expression in e	Charles Bradshaw, Marta Teperek, Angela Simeone, Vincent Gaggioli, Kei Miiyamoto, George Allen, Serap Erkek, Taejoon Kwon, Edward Marcotte, Philip Zegermann, Charles Bradshaw, Antoine Peters, John Gurdon, Jerome Jullien	48 samples, single-ended ChIP-seq libraries from sperm- and spermatid-derived haploid embryos pulling down H3K4me2, H3K4me3, H3K27me3 and H3K9me3, 3 replicates for each histone modification pull-down.
14  samples of both single-ended and pair-ended RNA-seq libraries for sperm- and spermatid-derived embryos. 
3 replicates of single-ended RNA-seq libraries for spermatid cells.
22 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm5b
16 samples of single-ended RNA-seq form sperm- and spermatid-derived embryos overexpressing Kdm6b
6 samples of single-ended MNase-seq from sperm and spermatid chromatin
12 samples of MBD-seq from sperm and spermatid chromatin	27034506	53997	SRP066384	WE + kdm6b + spermatid - NF10.5-11.5	RNA-Seq	NF10.5	embryo	Teperek M et al. (2016)	GSM1944447,GSM1944448,GSM1944452,GSM1944454	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75164/XENLA_9.2/RNA-Seq/Readme.txt
75278	Edward De Robertis	Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula	RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr	Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez	One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced.	27016259	51980	SRP066508	upper blastopore lip - NF10.5	RNA-Seq	NF10.5	upper blastopore lip	Ding Y et al. (2017)	GSM1948718,GSM1948720,GSM1948722	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/Readme.txt
75278	Edward De Robertis	Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula	RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr	Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez	One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced.	27016259	51980	SRP066508	WE - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM1948717	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/Readme.txt
75278	Edward De Robertis	Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula	RNA sequencing has allowed high-throughput screening of differential gene expression in many tissues and organisms. Xenopus laevis is a classical embr	Edward De Robertis, Yi Ding, Gabriele Colozza, Kelvin Zhang, Yuki Moriyama, Diego Ploper, Eric Sosa, Maria Benitez	One stage 10.5 wild type whole embryo and triplicates of stage 10.5 dorsal lips and ventral lips are sequenced.	27016259	51980	SRP066508	lower blastopore lip - NF10.5	RNA-Seq	NF10.5	lower blastopore lip	Ding Y et al. (2017)	GSM1948719,GSM1948721,GSM1948723	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE75278/XENLA_9.2/RNA-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	input WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973501	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	ep300 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973495,GSM1973496	ChIP-Seq/Transcription Factor/ep300	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	Pol II WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973499,GSM1973500	ChIP-Seq/Transcription Factor/Pol II	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	H3K36me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973497,GSM1973498	ChIP-Seq/Epigenetic/H3K36me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	H3K4me3 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973491,GSM1973492	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Readme.txt
76059	Simon van Heeringen	ChIP-sequencing in stage 10.5 Xenopus laevis embryos	Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.                                   	Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra	ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate.
BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.	27762356	52612	SRP067434	H3K4me1 WE - NF10.5	ChIP-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1973493,GSM1973494	ChIP-Seq/Epigenetic/H3K4me1	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76059/XENLA_9.2/ChIP-Seq/Readme.txt
76247	Ozren Bogdanovic	Single-base resolution methylome of Xenopus laevis embryos	Here we describe a base-resolution DNA methylation map of Xenopus laevis gastrula (st.10.5) embryos generated by whole genome bisulfite sequencing    	Ozren Bogdanovic, Ryan Lister	WGBS profiling of Xenopus laevis st.10.5 embryos	27762356	52612	SRP067679	WE - NF10.5	Bisulfite-Seq	NF10.5	embryo	Session AM et al. (2016)	GSM1977638	Bisulfite-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_9.2/Bisulfite-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_9.2/Bisulfite-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_9.2/Bisulfite-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_9.2/Bisulfite-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_9.2/Bisulfite-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76247/XENLA_9.2/Bisulfite-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981745,GSM1981746	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981745,GSM1981746	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981773,GSM1981774	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981767,GSM1981768	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981767,GSM1981768	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981765,GSM1981766	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981765,GSM1981766	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981747,GSM1981748	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981747,GSM1981748	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981763,GSM1981764	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj + DNmcidas - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981763,GSM1981764	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981761,GSM1981762	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981761,GSM1981762	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981755,GSM1981756	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981755,GSM1981756	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981749,GSM1981750	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981749,GSM1981750	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981777,GSM1981778	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981777,GSM1981778	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981775,GSM1981776	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981775,GSM1981776	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981779,GSM1981780	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + foxi1 - NF18	RNA-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM1981779,GSM1981780	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981751,GSM1981752	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981751,GSM1981752	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981769,GSM1981770	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981757,GSM1981758	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF13	RNA-Seq	NF13	animal cap	Quigley IK et al. (2017)	GSM1981757,GSM1981758	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981771,GSM1981772	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981753,GSM1981754	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + DNrbpj - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981753,GSM1981754	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981759,GSM1981760	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76342	Ian Quigley	RNAseq profiling of multiciliated cells	To determine what genes are upregulated in multiciliated cells, we manipulated Xenopus laevis ectoderm to either make more or fewer of this cell type 	Ian Quigley, Chris Kintner	We suppressed multiciliated cell development by activating the notch pathway with an injected mRNA encoding the intracellular domain of notch (icd) or by injecting an mRNA encoding a dominant-negative form of multicilin (dnmcidas). Conversely, we promoted multiciliated cell differentiation by blocking notch signaling with a DNA-binding mutant of Suppressor of Hairless (dbm), or by overexpressing an inducible form of multicilin (mcidas). We also coinjected these constructs in a way aimed at causing the greatest change in multiciliated cells and reducing background transcriptional programs not associated with these cells: for example, we coinjected icd with mcidas, in order to reduce other cell types specified by notch. After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA at 3, 6, and 9 hours after induction, roughly corresponding to stages 13, 16, and 18 and performed poly-a+  RNAseq (Illumina Truseq v2). We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) and took the intersection of genes differentially expressed between all comparisons in which the multiciliated cell number dramatically changed (icd vs. icd + mcidas, icd vs. dbm, dbm vs. dbm + dnmcidas) to obtain a core list of  multiciliated cell genes.	28103240	53709	SRP067781	animal cap + CAnotch1 + mcidas - NF16	RNA-Seq	NF16	animal cap	Quigley IK et al. (2017)	GSM1981759,GSM1981760	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76342/XENLA_9.2/RNA-Seq/Readme.txt
76363	Ian Quigley	3D chromosomal capture of X. laevis	To determine 3D chromosomal structure in differentating ectoderm of the frog  Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: 	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR).  After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331).	28103240	53709	SRP067835	WE - NF10.5	Hi-C	NF10.5	embryo	Quigley IK et al. (2017)	GSM1982234,GSM1982235	Hi-C/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/Readme.txt
76363	Ian Quigley	3D chromosomal capture of X. laevis	To determine 3D chromosomal structure in differentating ectoderm of the frog  Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: 	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR).  After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331).	28103240	53709	SRP067835	animal cap + mcidas - NF18	Hi-C	NF18	animal cap	Quigley IK et al. (2017)	GSM1982233	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/Readme.txt
76363	Ian Quigley	3D chromosomal capture of X. laevis	To determine 3D chromosomal structure in differentating ectoderm of the frog  Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: 	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR).  After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331).	28103240	53709	SRP067835	animal cap + mcidas - NF18	Hi-C	NF18	animal cap	Quigley IK et al. (2017)	GSM1982233	Hi-C/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/Readme.txt
76363	Ian Quigley	3D chromosomal capture of X. laevis	To determine 3D chromosomal structure in differentating ectoderm of the frog  Xenopus laevis, we performed tethered conformation capture (TCC) (PMID: 	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types (stage 10). In other experiments, we injected some embryos with mRNAs encoding an inducible form of multicilin (mcidas-HGR).  After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed tethered conformation capture on all harvested tissues (PMID: 22198700). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1 to interrogate 3D structure and the more fragmented genome version 7.1 to assist with chromosome assembly). TADs were called with HOMER, and chromosomes were assembled with both Lachesis (PMID: 24185095) and HighRise (arXiv:1502.05331).	28103240	53709	SRP067835	animal cap - NF18	Hi-C	NF18	animal cap	Quigley IK et al. (2017)	GSM1982232	Hi-C/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76363/XENLA_9.2/Hi-C/Readme.txt
76915	Li Gao	A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function	Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta	Li Gao, Xin Ma, Qinghua Tao	Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing.	26700681	51664	SRP068506	WE + Ascl1 control MO - NF11	RNA-Seq	NF11	embryo	Gao L et al. (2016)	GSM2040681,GSM2040682,GSM2040683	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/Readme.txt
76915	Li Gao	A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function	Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta	Li Gao, Xin Ma, Qinghua Tao	Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing.	26700681	51664	SRP068506	WE + Ascl1 control MO - NF11	RNA-Seq	NF11	embryo	Gao L et al. (2016)	GSM2040681,GSM2040682,GSM2040683	Manipulations/Morpholino	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/Readme.txt
76915	Li Gao	A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function	Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta	Li Gao, Xin Ma, Qinghua Tao	Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing.	26700681	51664	SRP068506	WE + Ascl1 MO - NF11	RNA-Seq	NF11	embryo	Gao L et al. (2016)	GSM2040684,GSM2040685,GSM2040686	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/Readme.txt
76915	Li Gao	A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function	Maternally expressed proteins function in vertebrates to establish the major body axes of the embryo, and to establish a pre-pattern that sets the sta	Li Gao, Xin Ma, Qinghua Tao	Examination of genes expression in control (cMO) and Ascl1 MO knockdown (AMOs) embryos by deep sequencing.	26700681	51664	SRP068506	WE + Ascl1 MO - NF11	RNA-Seq	NF11	embryo	Gao L et al. (2016)	GSM2040684,GSM2040685,GSM2040686	Manipulations/Morpholino	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76915/XENLA_9.2/RNA-Seq/Readme.txt
76991	Gert Veenstra	Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068637	WE + kat2a KD - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042204,GSM2042205	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/Readme.txt
76991	Gert Veenstra	Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068637	WE + kat2a KD - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042204,GSM2042205	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/Readme.txt
76991	Gert Veenstra	Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to crea	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068637	WE - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042206,GSM2042207	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76991/XENLA_9.2/RNA-Seq/Readme.txt
76994	Gert Veenstra	Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068680	WE + tbp + tbpl2 + tbpl1 - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042215,GSM2042216	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/Readme.txt
76994	Gert Veenstra	Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068680	WE + tbp + tbpl2 + tbpl1 - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042215,GSM2042216	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/Readme.txt
76994	Gert Veenstra	Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5	We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos co-injected with TBP-,TBP2- and TLF-AS antisense oligonucleotides an	Gert Veenstra, E Gazdag, I Kruijsbergen, G Veenstra	Differential expression analysis using RNA sequencing	26952988	51942	SRP068680	WE - NF10-10.5	RNA-Seq	NF10	embryo	Gazdag E et al. (2016)	GSM2042217,GSM2042218	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76994/XENLA_9.2/RNA-Seq/Readme.txt
77281	Toshi Shioda	RNA-seq based identification of potential RARgamma target genes in Xenopus laevis	The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ	Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg	Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates.	0	57140	SRP068951	WE + EtOH - NF18	RNA-Seq	NF18	embryo		GSM2047238,GSM2047239,GSM2047240,GSM2047241,GSM2047242	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq/Readme.txt
77281	Toshi Shioda	RNA-seq based identification of potential RARgamma target genes in Xenopus laevis	The development of massively parallel sequencing technologies has revolutionized transcriptome analysis. Sequencing of total cDNA (RNA-Seq) can determ	Toshi Shioda, Amanda Janesick, Weiyi Tang, Bruce Blumberg	Xenopus laevis early blastula stage embyos were exposed to (1) 0.1% EtOH as vehicle, (2) an RARgamma-selective dose (10 nM) NRX204647, and (3) a high dose (1 microM) of NRX204647, which activates all three RAR subtypes (RARalpha, beta, gamma). Each exposure group cosisted of five single-clutch replicates.	0	57140	SRP068951	WE + EtOH - NF18	RNA-Seq	NF18	embryo		GSM2047238,GSM2047239,GSM2047240,GSM2047241,GSM2047242	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77281/XENLA_9.2/RNA-Seq/Readme.txt
77363	Richard Harland	Genome-wide binding pattern of β-catenin during Xenopus gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries.	27091726	52028	SRP069034	input WE - NF11.5	ChIP-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050741,GSM2050742,GSM2050743	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/Readme.txt
77363	Richard Harland	Genome-wide binding pattern of β-catenin during Xenopus gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries.	27091726	52028	SRP069034	beta Catenin WE - NF11.5	ChIP-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050738,GSM2050739,GSM2050740	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/Readme.txt
77363	Richard Harland	Genome-wide binding pattern of β-catenin during Xenopus gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Xenopus laevis emrbyos were injected with a triple FLAG tagged beta-catenin at levels that did not effect phenotype. Pools of about 500 embryos were fixed for ChIP processing. An input sample was taken prior to immunoprecipitation with a Flag antibody. Both input and ChIP material were used to make sequencing libraries.	27091726	52028	SRP069034	beta Catenin WE - NF11.5	ChIP-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050738,GSM2050739,GSM2050740	ChIP-Seq/Transcription Factor/beta Catenin	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77363/XENLA_9.2/ChIP-Seq/Readme.txt
77364	Richard Harland	Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair.	27091726	52028	SRP069035	WE + dkk1 - NF11.5	RNA-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050745,GSM2050747,GSM2050749	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/Readme.txt
77364	Richard Harland	Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair.	27091726	52028	SRP069035	WE + dkk1 - NF11.5	RNA-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050745,GSM2050747,GSM2050749	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/Readme.txt
77364	Richard Harland	Transcriptome analysis of Wnt knockdown embryos reveals candidate canonical Wnt/β-catenin target genes during Xenopus laevis gastrulation	The canonical Wnt/β-catenin signaling pathway plays multiple roles during Xenopus gastrulation, including posteriorization of the neural plate, patte	Richard Harland, Rachel Kjolby, Richard Harland	Total RNA was extracted from a single uninjected control and a single dkk injected embryo from the same mating and used to make sequencing libraries. There are three replicates, each pair from a different mating pair.	27091726	52028	SRP069035	WE - NF11.5	RNA-Seq	NF11.5	embryo	Kjolby RAS et al. (2017)	GSM2050744,GSM2050746,GSM2050748	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Ready	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77364/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - naive - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057922	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - crushed - day 1 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057926	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - crushed - day 11 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057932	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - crushed - day 7 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057930	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - crushed - day 3 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057928	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - sham surgery control - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057923	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retina - juvenile	RNA-Seq	juvenile 	retina	Whitworth GB et al. (2017)	GSM2057921	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - sham surgery crush - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057924	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - control - day 11 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057931	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - control - day 1 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057925	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - control - day 3 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057927	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
77724	Gregg Whitworth	Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis	Unlike adult mammals, adult frogs regrow and regenerate their optic nerve following a crush injury. Using Translational Ribosome Affinity Purification	Gregg Whitworth, Gregg Whitworth, Bayan Misaghi, Andrew Watson, David Heinen, Nicholas Marsh-Armstrong, Fiona Watson	To investigate the changes in gene expression that occur as retinal ganglion cells (RGCs) recover and regrow following injury, we have used the TRAP method.  With TRAP we are able to isolate the actively translating pool of mRNAs from a specific cell type, in this case RGCs.  To do this, we created lines of transgenic frogs which express an eGFP-tagged variant of the large ribosomal protein rpl10a under the control of an RGC-specific promoter from the islet2b locus.  In our experimental framework, we quantify gene expression changes in RGCs recovering from optic nerve crush by comparing mRNA levels in samples collected from the eye undergoing a surgical crush (right) to the contralateral eye (left).  At discrete time points following optic nerve crush in the left eye, both eyes are rapidly dissected and the ribosome-associated RNAs purified from tissue extracts using eGFP antibodies conjugated to magnetic beads.  To control for the effects of surgery on RGCs, gene expression was also quantified in animals that underwent sham surgeries with no optic nerve crush ("sham" samples).  To control for the systemic effects of the surgical procedure per se, gene expression was also quantified in animals that did not undergo any surgery ("naive" sample).  These mRNA pools were used to construct libraries for RNA-Seq using poly(A) selection and 2x multiplexing.	27471010	52302	SRP069816	retinal ganglion cell - control - day 7 post op - juvenile	RNA-Seq	juvenile 	retinal ganglion cel	Whitworth GB et al. (2017)	GSM2057929	RNA-Seq/Embryonic Tissues/juvenile frog	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE77724/XENLA_9.2/RNA-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	H3K4me3 animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068802	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	input animal cap - NF18 - 9hr	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068810,GSM2068811	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	H3K27ac animal cap - NF18 - 3hr	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068803	ChIP-Seq/Epigenetic/H3K27ac	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	input animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068812	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	input animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068814	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	Rad21 animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068805	ChIP-Seq/Transcription Factor/Rad21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	foxj1 animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068808	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	foxj1 animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068808	ChIP-Seq/Transcription Factor/Foxj1	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	H3K27ac animal cap - NF18 - 9hr	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068804	ChIP-Seq/Epigenetic/H3K27ac	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	myb animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068806	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	myb animal cap - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068806	ChIP-Seq/Transcription Factor/Myb	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	foxj1 animal cap + rfx2 MO - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068809	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	foxj1 animal cap + rfx2 MO - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068809	Manipulations/Morpholino	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	foxj1 animal cap + rfx2 MO - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068809	ChIP-Seq/Transcription Factor/Foxj1	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	myb animal cap + mcidas - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068807	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	myb animal cap + mcidas - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068807	ChIP-Seq/Transcription Factor/Myb	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	input animal cap - NF18 - 3hr	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068813	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
78176	Ian Quigley	Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors	To determine the positions of promoters and enhancers in developing Xenopus laevis epithelial progenitors, we performed ChIPseq on the histone modific	Ian Quigley, Chris Kintner	Some embryos were harvested as wild-types; in other experiments, we injected  embryos with mRNAs encoding FLAG-foxj1 (with and without rfx2 morpholino) or GFP-myb (with and without an inducible form of multicilin (mcidas-HGR)).  We then isolated epithelial progenitors surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested chromatin at 9 hours after induction (roughly stage 18) and performed ChIPseq using antibodies against endogenous targets (H3K4me3, H3K27ac, rad21) or protein tags (FLAG, GFP). We then sequenced these libraries, aligned the reads to the X. laevis genome (version 9.1) with bwa mem and called peaks with HOMER, using input as background.	28103240	53709	SRP070664	input animal cap + mcidas - NF18	ChIP-Seq	NF18	animal cap	Quigley IK et al. (2017)	GSM2068815	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE78176/XENLA_9.2/ChIP-Seq/Readme.txt
80971	Mary King	High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration	During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants 	Mary King, Dawn Owens, Amanda Butler, Mary King	Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs.	28096217	53019	SRP074230	animal pole - oocyte VI	RNA-Seq	oocyte  VI	animal pole	Owens DA et al. (2017)	GSM2139449,GSM2139451,GSM2139453	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq/Readme.txt
80971	Mary King	High Throughput Analysis Reveals Novel Maternal Germline RNAs Critical for PGC Preservation and Proper Migration	During oogenesis hundreds of RNAs are selectively localized to either the animal or vegetal cortical region. These maternal RNAs include determinants 	Mary King, Dawn Owens, Amanda Butler, Mary King	Examination of animal and vegetal pole samples of stg. VI X. laevis oocyte to determine vegetally enriched genes that may contribute to germ plasm and PGCs.	28096217	53019	SRP074230	vegetal pole - oocyte VI	RNA-Seq	oocyte  VI	vegetal pole	Owens DA et al. (2017)	GSM2139450,GSM2139452,GSM2139454	RNA-Seq/Embryonic Tissues/unfertilized egg	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE80971/XENLA_9.2/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	vegetal yolk mass - NF10-10.25	RNA-Seq	NF10	vegetal yolk mass	Blitz IL et al. (2017)	GSM2152754,GSM2152755	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	animal cap - NF10-10.25	RNA-Seq	NF10	animal cap	Blitz IL et al. (2017)	GSM2152748,GSM2152749	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5/animal cap	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	ventral marginal zone - NF10-10.25	RNA-Seq	NF10	ventral marginal zon	Blitz IL et al. (2017)	GSM2152756,GSM2152757	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	WE - NF10-10.25	RNA-Seq	NF10	embryo	Blitz IL et al. (2017)	GSM2152758,GSM2152759	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	lateral marginal zone - NF10-10.25	RNA-Seq	NF10	lateral	Blitz IL et al. (2017)	GSM2152752,GSM2152753	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Readme.txt
81458	Kitt Paraiso	Regional expression of X. tropicalis transcription factors in early gastrula embryos	Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes.Methods: Embryos were 	Kitt Paraiso, Ira Blitz, Kitt Paraiso	mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.	27475627	52307	SRP075201	dorsal marginal zone - NF10-10.25	RNA-Seq	NF10	dorsal marginal zone	Blitz IL et al. (2017)	GSM2152750,GSM2152751	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE81458/XENTR_9.1/RNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	animal cap + CAbmpr1a - NF11	miRNA-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218802,GSM2218803,GSM2218804	miRNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	animal cap + CAbmpr1a - NF11	miRNA-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218802,GSM2218803,GSM2218804	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	animal cap + nog - NF11	miRNA-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218805,GSM2218806,GSM2218807	miRNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	animal cap + nog - NF11	miRNA-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218805,GSM2218806,GSM2218807	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/miRNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	myc animal cap + CAbmpr1a - NF11	RIP-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218808,GSM2218809,GSM2218810,GSM2218811	RIP-Seq/Embryonic Tissues/Gastrula NF10 to 12.5/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	myc animal cap + CAbmpr1a - NF11	RIP-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218808,GSM2218809,GSM2218810,GSM2218811	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	WE + nog - NF11	RNA-Seq	NF11	embryo	Shah VV et al. (2017)	GSM2218822,GSM2218823,GSM2218824	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	WE + nog - NF11	RNA-Seq	NF11	embryo	Shah VV et al. (2017)	GSM2218822,GSM2218823,GSM2218824	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	myc animal cap + nog - NF11	RIP-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218812,GSM2218813,GSM2218814,GSM2218815	RIP-Seq/Embryonic Tissues/Gastrula NF10 to 12.5/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	myc animal cap + nog - NF11	RIP-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218812,GSM2218813,GSM2218814,GSM2218815	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	WE + CAbmpr1a - NF11	RNA-Seq	NF11	embryo	Shah VV et al. (2017)	GSM2218819,GSM2218820,GSM2218821	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	WE + CAbmpr1a - NF11	RNA-Seq	NF11	embryo	Shah VV et al. (2017)	GSM2218819,GSM2218820,GSM2218821	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RNA-Seq/Readme.txt
83784	Amy Sater	Identification of microRNAs and microRNA targets in Xenopus ectoderm	Purpose: The establishment of cell lineages occurs via a dynamic progression of gene regulatory networks that underlie developmental commitment and di	Amy Sater, Vrutant Shah	Identification of microRNAs and microRNA targets in establishment of early ectodermal tissues in Xenopus.	27623002	52452	SRP077327	myc animal cap - NF11	RIP-Seq	NF11	animal cap	Shah VV et al. (2017)	GSM2218816,GSM2218817,GSM2218818	RIP-Seq/Embryonic Tissues/Gastrula NF10 to 12.5/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE83784/XENLA_9.2/RIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 foregut + BIO - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337686	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 foregut + BIO - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337686	ChIP-Seq/Transcription Factor/ep300	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input hindgut + BIO - NF20 (p300)	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337689	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin foregut + BIO - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337678	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin foregut + BIO - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337678	ChIP-Seq/Transcription Factor/beta Catenin	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input WE - NF20 (smad1)	ChIP-Seq	NF20	embryo	Stevens ML et al. (2017)	GSM2337673	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	Smad1 WE - NF20	ChIP-Seq	NF20	embryo	Stevens ML et al. (2017)	GSM2337674	ChIP-Seq/Transcription Factor/Smad1	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin foregut - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337676	ChIP-Seq/Transcription Factor/beta Catenin	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin hindgut - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337680	ChIP-Seq/Transcription Factor/beta Catenin	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 foregut - NF20	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337684	ChIP-Seq/Transcription Factor/ep300	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin hindgut + BIO - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337682	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	beta Catenin hindgut + BIO - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337682	ChIP-Seq/Transcription Factor/beta Catenin	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 WE - NF20	ChIP-Seq	NF20	embryo	Stevens ML et al. (2017)	GSM2337672	ChIP-Seq/Transcription Factor/ep300	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input foregut + BIO - NF20 (p300)	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337685	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 hindgut - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337688	ChIP-Seq/Transcription Factor/ep300	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input hindgut - NF20 (bcat)	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337679	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 hindgut + BIO - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337690	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	ep300 hindgut + BIO - NF20	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337690	ChIP-Seq/Transcription Factor/ep300	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input foregut + BIO - NF20 (bcat)	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337677	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input hindgut + BIO - NF20 (bcat)	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337681	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input hindgut - NF20 (p300)	ChIP-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337687	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input WE - NF20 (p300)	ChIP-Seq	NF20	embryo	Stevens ML et al. (2017)	GSM2337671	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input foregut - NF20 (p300)	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337683	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87652	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [ChIP-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	ChIP of whole embryos, foregut and hindgut explants for 3 different antibodies (b-catenin, Smad1 and p300).	28219948	53106	SRP090888	input foregut - NF20 (bcat)	ChIP-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337675	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87652/XENLA_9.2/ChIP-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + dkk1 - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337718,GSM2337719	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + dkk1 - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337718,GSM2337719	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut mesoderm - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337726,GSM2337727	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337700,GSM2337701,GSM2337702	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + DMH1 - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337703,GSM2337704,GSM2337705	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + DMH1 - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337703,GSM2337704,GSM2337705	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + BIO - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337706,GSM2337707,GSM2337708	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut + BIO - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337706,GSM2337707,GSM2337708	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut mesoderm - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337722,GSM2337723	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + DMH1 - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337694,GSM2337695,GSM2337696	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + DMH1 - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337694,GSM2337695,GSM2337696	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut endoderm - NF20	RNA-Seq	NF20	foregut primordium	Stevens ML et al. (2017)	GSM2337720,GSM2337721	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + BIO - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337697,GSM2337698,GSM2337699	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + BIO - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337697,GSM2337698,GSM2337699	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337691,GSM2337692,GSM2337693	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337716,GSM2337717	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut - NF20	RNA-Seq	NF20	hindgut	Stevens ML et al. (2017)	GSM2337716,GSM2337717	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + dkk1 - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337714,GSM2337715	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut + dkk1 - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337714,GSM2337715	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	hindgut endoderm - NF20	RNA-Seq	NF20		Stevens ML et al. (2017)	GSM2337724,GSM2337725	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337712,GSM2337713	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	foregut - NF20	RNA-Seq	NF20	foregut	Stevens ML et al. (2017)	GSM2337712,GSM2337713	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
87653	Aaron Zorn	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Digestive system development is orchestrated by combinatorial signaling interactions between endoderm and mesoderm, but how they are integrated in the	Aaron Zorn, Mariana Stevens, Praneet Chaturvedi, Scott Rankin, Melissa Macdonald, Sajjeev Jagannathan, Masashi Yukawa, Artem Barski	mRNA profile of foregut and hindgut explants from BMP and Wnt manipulated embryos.	28219948	53106	SRP090889	dorsal embryo - NF20	RNA-Seq	NF20	dorsal	Stevens ML et al. (2017)	GSM2337709,GSM2337710,GSM2337711	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE87653/XENLA_9.2/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	foxn4 animal cap + mcidas - NF18	ChIP-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363463	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	foxn4 animal cap + mcidas - NF18	ChIP-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363463	ChIP-Seq/Transcription Factor/Foxn4	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 MO - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363460,GSM2363461	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 MO - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363460,GSM2363461	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 MO - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363460,GSM2363461	Manipulations/Morpholino	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	foxn4 animal cap - NF18	ChIP-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363462	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	foxn4 animal cap - NF18	ChIP-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363462	ChIP-Seq/Transcription Factor/Foxn4	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	input animal cap - NF18	ChIP-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363464,GSM2363465,GSM2363466,GSM2363467,GSM2363468,GSM2363469	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/ChIP-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxj1 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363456,GSM2363457	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxj1 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363456,GSM2363457	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxj1 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363456,GSM2363457	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2364660,GSM2364661,GSM2364662	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2364660,GSM2364661,GSM2364662	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363458,GSM2363459	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21/animal cap	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363458,GSM2363459	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Readme.txt
89271	Ian Quigley	RNAseq and ChIPseq profiling of Foxn4 and Foxj1 in multiciliated cells	Foxn4 and Foxj1 are expressed in multiciliated cells. Here, we dissect their role with knockdowns using two different technologies (morpholinos and CR	Ian Quigley, Chris Kintner	To examine Foxn4 and Foxj1's effect on multiciliated cells, we knocked them down in tissue where we also overexpressed an inducible form of multicilin (also known as mcidas; Stubbs et al., 2012). After injecting, we isolated ectoderm surgically and, when injected with multicilin, induced at mid-stage 11. We then harvested RNA or chromatin at 9 hours after induction, roughly corresponding to stage 18 and performed poly-a+  RNAseq (Illumina Truseq v2) or ChIPseq. We then aligned reads to X. laevis gene models (Mayball version, Chung and Kwon et al. 2014) or the genome (v7.1) and determined differential expression or binding targets. To determine differential expression, we compared RNAseq reads from ectoderm isolated from embryos injected with multicilin alone, as reported in Ma et al. 2014 (PMID: 24934224, NCBI GEO:GSE59309) with samples here injected with multicilin and Foxn4 or Foxj1 perturbations.	27864379	52793	SRP092243	animal cap + mcidas + foxn4 CRISPR - NF18	RNA-Seq	NF18	animal cap	Campbell EP et al. (2016)	GSM2363458,GSM2363459	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89271/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428183,GSM2428184,GSM2428185,GSM2428186	RNA-Seq/Embryonic Tissue/Gastrula  NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428212,GSM2428213,GSM2428214,GSM2428215	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428243,GSM2428244,GSM2428245,GSM2428246	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428200,GSM2428201,GSM2428202	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428191,GSM2428192,GSM2428193,GSM2428194	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428228,GSM2428229,GSM2428230,GSM2428231	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428187,GSM2428188,GSM2428189	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428187,GSM2428188,GSM2428189	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428203,GSM2428204,GSM2428205,GSM2428206,GSM2428207	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428203,GSM2428204,GSM2428205,GSM2428206,GSM2428207	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428195,GSM2428196,GSM2428197,GSM2428198	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428195,GSM2428196,GSM2428197,GSM2428198	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L{K4M} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428251,GSM2428252,GSM2428253,GSM2428254	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L{K4M} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428251,GSM2428252,GSM2428253,GSM2428254	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L{K4M} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428251,GSM2428252,GSM2428253,GSM2428254	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428247,GSM2428248,GSM2428249,GSM2428250	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428247,GSM2428248,GSM2428249,GSM2428250	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + h3-3a.L - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428247,GSM2428248,GSM2428249,GSM2428250	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428216,GSM2428217,GSM2428218,GSM2428219	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428216,GSM2428217,GSM2428218,GSM2428219	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428216,GSM2428217,GSM2428218,GSM2428219	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428232,GSM2428233,GSM2428234,GSM2428235	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428232,GSM2428233,GSM2428234,GSM2428235	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428232,GSM2428233,GSM2428234,GSM2428235	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428220,GSM2428221,GSM2428222,GSM2428223	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428220,GSM2428221,GSM2428222,GSM2428223	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428220,GSM2428221,GSM2428222,GSM2428223	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428236,GSM2428237,GSM2428238	RNA-Seq/Embryonic Tissue/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428236,GSM2428237,GSM2428238	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	RNA-Seq	NF11	ectoderm	Hörmanseder E et al. (2017)	GSM2428236,GSM2428237,GSM2428238	Manipulations/Other	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428182	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428190	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428199	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + h3-3a.L{K4M} - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428241,GSM2428242	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + h3-3a.L{K4M} - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428241,GSM2428242	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + h3-3a.L - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428239,GSM2428240	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + h3-3a.L - NF21	RNA-Seq	NF21	endoderm	Hörmanseder E et al. (2017)	GSM2428239,GSM2428240	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{H499A_del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428208,GSM2428209	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{H499A_del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428208,GSM2428209	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428210,GSM2428211	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428210,GSM2428211	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428226,GSM2428227	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428226,GSM2428227	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	H3K4me3 endoderm - NF18	ChIP-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428255	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	input endoderm - NF18	ChIP-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428256	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	input endoderm - NF18	ChIP-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428258	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	H3K4me3 endoderm - NF18	ChIP-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428257	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/ChIP-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{H499A_del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428224,GSM2428225	RNA-Seq/Embryonic Tissue/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
92366	Angela Simeone	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Xenopus eggs can induce the reversal of differentiation processes of somatic cells. Yet, the egg is not fully efficient in reprogramming a differentia	Angela Simeone, Eva Hörmanseder, George Allen, Charles Bradshaw, Magdalena Figlmüller, Jerome Jullien, John Gurdon	73 samples, single-ended RNA-seq libraries from neurula stage 18 or 21 endoderm and gastrula stage 11 ectoderm samples; 2 single-ended ChIP-seq libraries from endoderm cells of neurula (stage 21) embryos with antibody for H3K4me3, 2 replicates for each histone modification pull-down.	28366589	54691	SRP095083	endoderm + Mmu.kdm5b{H499A_del} - NF18	RNA-Seq	NF18	endoderm	Hörmanseder E et al. (2017)	GSM2428224,GSM2428225	Manipulations/mRNA injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE92366/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + ctnnb1 MO - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446136,GSM2446140	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + ctnnb1 MO - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446136,GSM2446140	Manipulations/Morpholino	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + LiCl - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446137,GSM2446141	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + LiCl - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446137,GSM2446141	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	dorsal WE - dorsal explant - NF10.5	RNA-Seq	NF10.5	dorsal	Ding Y et al. (2017)	GSM2446100,GSM2446105,GSM2446111,GSM2446113,GSM2446115	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + wnt8a - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446118,GSM2446121,GSM2446124	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + wnt8a - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446118,GSM2446121,GSM2446124	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + cer1 - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446128,GSM2446131,GSM2446134	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + cer1 - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446128,GSM2446131,GSM2446134	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + LiCl - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446099,GSM2446109	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + LiCl - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446099,GSM2446109	Manipulations/Chemical	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + cer1 - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446119,GSM2446122,GSM2446125	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + cer1 - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446119,GSM2446122,GSM2446125	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + sia1 - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446104,GSM2446110	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + sia1 - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446104,GSM2446110	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446097,GSM2446102,GSM2446107,GSM2446117,GSM2446120,GSM2446123	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	ventral WE - ventral explant - NF10.5	RNA-Seq	NF10.5	ventral	Ding Y et al. (2017)	GSM2446101,GSM2446106,GSM2446112,GSM2446114,GSM2446116	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446126,GSM2446129,GSM2446132,GSM2446135,GSM2446139	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + sia1 - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446138,GSM2446142	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + sia1 - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446138,GSM2446142	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + ctnnb1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446098,GSM2446103,GSM2446108	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + ctnnb1 MO - NF10.5	RNA-Seq	NF10.5	embryo	Ding Y et al. (2017)	GSM2446098,GSM2446103,GSM2446108	Manipulations/Morpholino	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + wnt8a - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446127,GSM2446130,GSM2446133	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
93195	Edward De Robertis	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	During Xenopus gastrulation, dorsal stabilization of β-Catenin at the earliest stage and subsequent target genes expression are critical for dorsal-v	Edward De Robertis, Yi Ding, Diego Ploper, Eric Sosa, Gabriele Colozza, Yuki Moriyama, Maria Benitez, Kelvin Zhang, Daria Merkurjev	A genome-wide study of the effects of depleting the early dorsal b-Catenin signal which is responsible for the induction of the body axis.	28348214	53589	SRP096124	WE + wnt8a - NF9	RNA-Seq	NF9	embryo	Ding Y et al. (2017)	GSM2446127,GSM2446130,GSM2446133	Manipulations/mRNA Injection	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE93195/XENLA_9.2/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + hbg1 cMO - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537314,GSM2537315,GSM2537316	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + hbg1 cMO - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537314,GSM2537315,GSM2537316	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + hbg1 cMO - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537323,GSM2537324,GSM2537325	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + hbg1 cMO - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537323,GSM2537324,GSM2537325	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE +tbxt MO + tbxt.2 MO - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537317,GSM2537318,GSM2537319	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE +tbxt MO + tbxt.2 MO - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537317,GSM2537318,GSM2537319	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE +tbxt MO + tbxt.2 MO - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537326,GSM2537327,GSM2537328	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE +tbxt MO + tbxt.2 MO - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537326,GSM2537327,GSM2537328	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt-/+, tbxt.2-/+ - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537332,GSM2537333,GSM2537334	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt-/+, tbxt.2-/+ - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537332,GSM2537333,GSM2537334	Mutant Lines	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{-/+}, tbxt.2{-/+} - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537341,GSM2537342,GSM2537343	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{-/+}, tbxt.2{-/+} - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537341,GSM2537342,GSM2537343	Mutant Lines	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537311,GSM2537312,GSM2537313	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537320,GSM2537321,GSM2537322	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{+/+}, tbxt.2{+/+} - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537329,GSM2537330,GSM2537331	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{+/+}, tbxt.2{+/+} - NF26	RNA-Seq	NF26	embryo	Gentsch GE et al. (2018)	GSM2537329,GSM2537330,GSM2537331	Mutant Lines	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{+/+}, tbxt.2{+/+} - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537338,GSM2537339,GSM2537340	RNA-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
96655	George Gentsch	Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus	We report on the implications of genetic KO versus MO-mediated KD of the mesoderm-specifying Brachyury paralogues in the Western clawed frog Xenopus t	George Gentsch, George Gentsch, James Smith	Comparison of poly(A) transcriptome between Brachyury null mutants and morphants over two tailbud stages.	29478923	54637	SRP101960	WE + tbxt{+/+}, tbxt.2{+/+} - NF34	RNA-Seq	NF33/34	embryo	Gentsch GE et al. (2018)	GSM2537338,GSM2537339,GSM2537340	Mutant Lines	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96655/XENTR_9.1/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	brain (male) - adult	RNA-Seq	adult 	brain	Marin R et al. (2017)	GSM2563124,GSM2563125	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	brain (female) - adult	RNA-Seq	adult 	brain	Marin R et al. (2017)	GSM2563122,GSM2563123	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	heart (female) - adult	RNA-Seq	adult 	heart	Marin R et al. (2017)	GSM2563126,GSM2563127	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	heart (male) - adult	RNA-Seq	adult 	heart	Marin R et al. (2017)	GSM2563128,GSM2563129	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	kidney (female) - adult	RNA-Seq	adult 	kidney	Marin R et al. (2017)	GSM2563130,GSM2563131	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	kidney (male) - adult	RNA-Seq	adult 	kidney	Marin R et al. (2017)	GSM2563132,GSM2563133	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	liver (female) - adult	RNA-Seq	adult 	liver	Marin R et al. (2017)	GSM2563134,GSM2563135	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	liver (male) - adult	RNA-Seq	adult 	liver	Marin R et al. (2017)	GSM2563136,GSM2563137	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	ovary - adult	RNA-Seq	adult 	ovary	Marin R et al. (2017)	GSM2563138,GSM2563139	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Readme.txt
97367	Diego Cortez	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage	In order to study the green anole dosage compensation mechanism we generated strand-specific RNA-seq libraries for a total of 186 samples from the gre	Diego Cortez, Henrik Kaessmann, Francesco Lamanna, Madapura Pradeepa	We generated strand-specific RNA-seq libraries using the Illumina TruSeq Stranded mRNA Library protocol. Sample size (minimum one male and one female for each species) was established to have a wide spectrum across amniotes and to capture general male/female sex-specific patterns. Each source RNA was of high quality, as assessed using a Fragment Analyzer machine from Advanced Analytical (RIN median = 9, RQN median = 8). Each library was sequenced on Illumina HiSeq 2500 platforms at the Lausanne Genomic Technologies Facility (https://www.unil.ch/gtf/en/home.html). At least 17 million sequencing reads (100 nt, single-end) were produced for each library (median: 34 million reads). Examination of H4K16ac enrichment between males and females in liver and brain. Two biological replicates, four genomic DNA input libraries. Y-linked transcripts of Anolis carolinensis were obtained using a male/female subtraction approach. The sequences were validated using re-sequenced male and female genomes.	0	56019	SRP102989	testis - adult	RNA-Seq	adult 	testis	Marin R et al. (2017)	GSM2563140,GSM2563141	RNA-Seq/Adult Tissues	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE97367/XENTR_9.1/RNA-Seq/Readme.txt
102047	Mary Lou King	The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development	Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so	Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King	Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched transcripts that may contribute to germline development.	29158442	54309	SRP114372	endoderm - NF12	RNA-Seq	NF12	endoderm	Butler AM et al. (2018)	GSM2722410,GSM2722411,GSM2722412	RNA-Seq/Embryonic Tissues/Gastrula NF10 to12.5/	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq/Readme.txt
102047	Mary Lou King	The Xenopus Primordial Germ Cell Transcriptome: Unexpected Role for sox7 in Early PGC Development	Xenopus primordial germ cells (PGCs) are determined by the presence of maternally derived germ plasm. Germ plasm components both protect PGCs from so	Mary Lou King, Amanda Butler, Dawn Owens, Lingyu Wang, Mary King	Examination of X. laevis primordial germ cell (PGC) and neighboring endoderm cell (Endo) RNAs after lineage segregation to determine PGC-enriched transcripts that may contribute to germline development.	29158442	54309	SRP114372	primordial germ cell - NF12	RNA-Seq	NF12	primordial germ cell	Butler AM et al. (2018)	GSM2722413,GSM2722414,GSM2722415	RNA-Seq/Embryonic Tissues/Gastrula NF10 to12.5/	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE102047/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF14	RNA-Seq	NF14	embryo	Plouhinec JL et al. (2017)	GSM2758863,GSM2758864	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	chordal neural plate border - NF14	RNA-Seq	NF14	chordal neural plate	Plouhinec JL et al. (2017)	GSM2758810,GSM2758842,GSM2758853,GSM2758857,GSM2758867	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	chordal neural plate border - NF12.5	RNA-Seq	NF12.5	chordal neural plate	Plouhinec JL et al. (2017)	GSM2758818,GSM2758825,GSM2758833	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	anterior neural fold, preplacodal ectoderm - NF14	RNA-Seq	NF14	anterior neural fold	Plouhinec JL et al. (2017)	GSM2758846,GSM2758852,GSM2758854,GSM2758859,GSM2758862	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	neural plate - NF14	RNA-Seq	NF14	neural plate	Plouhinec JL et al. (2017)	GSM2758815,GSM2758816	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	pre-chordal neural plate - NF14	RNA-Seq	NF14	pre-chordal neural p	Plouhinec JL et al. (2017)	GSM2758839,GSM2758845,GSM2758847	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	posterior non-neural ectoderm - NF14	RNA-Seq	NF14	non-neur. ecto.	Plouhinec JL et al. (2017)	GSM2758844,GSM2758850,GSM2758851	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	neural plate border - NF14	RNA-Seq	NF14	neural plate border	Plouhinec JL et al. (2017)	GSM2758813,GSM2758814,GSM2758883,GSM2758887	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	chordal neural plate - NF12.5	RNA-Seq	NF12.5	chordal neural plate	Plouhinec JL et al. (2017)	GSM2758817,GSM2758824,GSM2758832	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	pre-chordal neural plate - NF12.5	RNA-Seq	NF12.5	pre-chordal neural p	Plouhinec JL et al. (2017)	GSM2758821,GSM2758828,GSM2758836	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	pre-chordal neural plate border - NF14	RNA-Seq	NF14	pre-chordal neural p	Plouhinec JL et al. (2017)	GSM2758809,GSM2758841,GSM2758849,GSM2758856,GSM2758865,GSM2758866	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	neural crest - NF17	RNA-Seq	NF17	neural crest	Plouhinec JL et al. (2017)	GSM2758811,GSM2758812,GSM2758882,GSM2758884	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	pre-chordal neural plate border, preplacodal ectoderm - NF12.5	RNA-Seq	NF12.5	pre-chordal neural p	Plouhinec JL et al. (2017)	GSM2758823,GSM2758830,GSM2758838	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF12.5	RNA-Seq	NF12.5	embryo	Plouhinec JL et al. (2017)	GSM2758870,GSM2758877	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	lateral neural plate border - NF12.5	RNA-Seq	NF12.5	neural plate border	Plouhinec JL et al. (2017)	GSM2758819,GSM2758826,GSM2758834	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	anterior non-neural ectoderm - NF14	RNA-Seq	NF14	non-neur. ecto.	Plouhinec JL et al. (2017)	GSM2758843,GSM2758858,GSM2758861	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF12	RNA-Seq	NF12	embryo	Plouhinec JL et al. (2017)	GSM2758869,GSM2758876	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	preplacodal ectoderm - NF17	RNA-Seq	NF17	preplacodal ectoderm	Plouhinec JL et al. (2017)	GSM2758885,GSM2758886	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	pre-chordal neural plate border - NF12.5	RNA-Seq	NF12.5	pre-chordal neural p	Plouhinec JL et al. (2017)	GSM2758822,GSM2758829,GSM2758831,GSM2758837	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF18-19	RNA-Seq	NF18	embryo	Plouhinec JL et al. (2017)	GSM2758874,GSM2758881	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF11.5	RNA-Seq	NF11.5	embryo	Plouhinec JL et al. (2017)	GSM2758868,GSM2758875	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF16-17	RNA-Seq	NF16	embryo	Plouhinec JL et al. (2017)	GSM2758873,GSM2758880	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF13	RNA-Seq	NF13	embryo	Plouhinec JL et al. (2017)	GSM2758871,GSM2758878	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	non-neural ectoderm - NF12.5	RNA-Seq	NF12.5	non-neur. ecto.	Plouhinec JL et al. (2017)	GSM2758820,GSM2758827,GSM2758835	RNA-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	WE - NF14-15	RNA-Seq	NF14	embryo	Plouhinec JL et al. (2017)	GSM2758872,GSM2758879	RNA-Seq/Whole Embryo/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
103240	Anne-Helene Monsoro-Burq	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	During vertebrate neurulation, the embryonic ectoderm is patterned into lineage progenitors for neural plate, neural crest, placodes and epidermis. He	Anne-Helene Monsoro-Burq, Jean-Louis Plouhinec, Sofía Medina-Ruiz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael Eisen, Richard Harland, Anne Monsoro-Burq	Xenopus laevis ectodermal sample were dissected at embryonic stages 12.5, 14, and 17 and mRNA profiles were generated by deep sequencing using an Illumina HiSeq 2000	29049289	54144	SRP116397	chordal neural plate - NF14	RNA-Seq	NF14	chordal neural plate	Plouhinec JL et al. (2017)	GSM2758840,GSM2758848,GSM2758855,GSM2758860	RNA-Seq/Embryonic Tissues/Neurula NF13 to NF21	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE103240/XENLA_9.2/RNA-Seq/Readme.txt
107424	Rita Monteiro	Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis	We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen	Rita Monteiro, Rita Monteiro, James Smith, George Gentsch	Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses.	29709598	54855	SRP125755	WE + LiCl - NF11/11.5	RNA-Seq	NF11	embryo	Monteiro RS et al. (2018)	GSM2866830,GSM2866831,GSM2866832,GSM2866833,GSM2866834	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/Readme.txt
107424	Rita Monteiro	Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis	We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen	Rita Monteiro, Rita Monteiro, James Smith, George Gentsch	Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses.	29709598	54855	SRP125755	WE + UV - NF11/11.5	RNA-Seq	NF11	embryo	Monteiro RS et al. (2018)	GSM2866835,GSM2866836,GSM2866837,GSM2866838,GSM2866839	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/Readme.txt
107424	Rita Monteiro	Transcriptomics of Dorso-Ventral axis determination in Xenopus tropicalis	We studied the transcriptomic differences between ventralised and dorsalised Xenopus tropicalisembryos as a result of UV irradiation and LiCl treatmen	Rita Monteiro, Rita Monteiro, James Smith, George Gentsch	Comparison of poly(A) transcriptome between Xenopus tropicalis LiCl-, UV-treated and untreated gastrulae embryos. For each condition there are five biological replicates that were used for the analyses.	29709598	54855	SRP125755	WE - NF11/11.5 	RNA-Seq	NF11	embryo	Monteiro RS et al. (2018)	GSM2866840,GSM2866841,GSM2866842,GSM2866843,GSM2866844	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE107424/XENTR_9.1/RNA-Seq/Readme.txt
111454	Ye Jin	RNA Sequencing facilitates the identification of transcriptional targets of Pitx1 in Xenopus laevis	The cement gland in Xenopus laevis has long been used as a model to study the interplay of cell signaling and transcription factors during embryogenes	Ye Jin, Daniel Weinstein	mRNA profile of pitx1-injected or control animal cap explants at neurula stages were generated by deep sequencing, in duplicate, using Illumina HiSeq2500 by Genewiz.	29530451	54672	SRP134011	animal cap - NF18 + pitx1 mRNA	RNA-Seq	NF17	animal cap	Jin Y et al. (2018)	GSM3031399,GSM3031401	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq/Readme.txt
111454	Ye Jin	RNA Sequencing facilitates the identification of transcriptional targets of Pitx1 in Xenopus laevis	The cement gland in Xenopus laevis has long been used as a model to study the interplay of cell signaling and transcription factors during embryogenes	Ye Jin, Daniel Weinstein	mRNA profile of pitx1-injected or control animal cap explants at neurula stages were generated by deep sequencing, in duplicate, using Illumina HiSeq2500 by Genewiz.	29530451	54672	SRP134011	animal cap - NF18	RNA-Seq	NF17	animal cap	Jin Y et al. (2018)	GSM3031400,GSM3031402	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE111454/XENLA_9.2/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT (NG Cap-C)	Hi-C	NF8	embryo	Gentsch GE et al. (2019)	GSM3099522,GSM3099523,GSM3099524	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099588,GSM3099589,GSM3099590	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099588,GSM3099589,GSM3099590	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099582,GSM3099583,GSM3099584	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099582,GSM3099583,GSM3099584	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099585,GSM3099586,GSM3099587	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099585,GSM3099586,GSM3099587	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099534,GSM3099535,GSM3099536	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099534,GSM3099535,GSM3099536	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF11	ChIP-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3099456	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099531,GSM3099532,GSM3099533	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099531,GSM3099532,GSM3099533	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT naked (DNase-Seq)	DNase-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099520,GSM3099521	Chromatin Accessibility/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT (DNase-Seq)	DNase-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099516,GSM3099517	Chromatin Accessibility/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT (DNase-Seq)	DNase-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099518,GSM3099519	Chromatin Accessibility/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT (DNase-Seq)	DNase-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099518,GSM3099519	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/DNase-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE +  pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT (NG Cap-C)	Hi-C	NF8	embryo	Gentsch GE et al. (2019)	GSM3099525,GSM3099526,GSM3099527	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/Hi-C/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099600,GSM3099601,GSM3099602	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099600,GSM3099601,GSM3099602	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	H3K4me1 + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099496,GSM3099497	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	H3K4me1 + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099496,GSM3099497	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	H3K4me1 WE - NF8 MBT 	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099494,GSM3099495	ChIP-Seq/Epigenetic/H3K4me1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Myod1 WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099476,GSM3099477	ChIP-Seq/Transcription Factor/Myod1	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Myod1 WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099476,GSM3099477	Manipulations/mRNA Injection	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099480,GSM3099481	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099480,GSM3099481	Manipulations/mRNA Injection	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099492,GSM3099493	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099492,GSM3099493	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099552,GSM3099553,GSM3099554	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099552,GSM3099553,GSM3099554	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099546,GSM3099547,GSM3099548	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099546,GSM3099547,GSM3099548	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099612,GSM3099613,GSM3099614	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099612,GSM3099613,GSM3099614	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	sox3 WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099478,GSM3099479	Manipulations/mRNA Injection	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	sox3 WE + myod1 - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099478,GSM3099479	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE - NF9	ChIP-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099486,GSM3099487	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9	ChIP-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099488,GSM3099489	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9	ChIP-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099488,GSM3099489	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE - NF6	ChIP-Seq	NF6	embryo	Gentsch GE et al. (2019)	GSM3099459	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099460	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Ctnnb1 WE - NF10 	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099461	ChIP-Seq/Transcription Factor/beta Catenin	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099528,GSM3099529,GSM3099530	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + alpha-amanitin - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099528,GSM3099529,GSM3099530	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099579,GSM3099580,GSM3099581	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099579,GSM3099580,GSM3099581	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099573,GSM3099574,GSM3099575	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099573,GSM3099574,GSM3099575	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099576,GSM3099577,GSM3099578	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099576,GSM3099577,GSM3099578	RNA-Seq/Whole Embryo/Blastula NF7 to NF9		tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF12	ChIP-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3099457	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF13	ChIP-Seq	NF13	embryo	Gentsch GE et al. (2019)	GSM3099458	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF6	ChIP-Seq	NF6	embryo	Gentsch GE et al. (2019)	GSM3099452	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF7	ChIP-Seq	NF7	embryo	Gentsch GE et al. (2019)	GSM3099453	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099597,GSM3099598,GSM3099599	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099597,GSM3099598,GSM3099599	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099591,GSM3099592,GSM3099593	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099591,GSM3099592,GSM3099593	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099594,GSM3099595,GSM3099596	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + DMSO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099594,GSM3099595,GSM3099596	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099454	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Pol II WE - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099455,GSM3099490,GSM3099491	ChIP-Seq/Transcription Factor/Pol II	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	phospho-smad1/5/9 WE - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099463,GSM3099464	ChIP-Seq/Transcription Factor/phospho-Smad1_5_9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	phospho-smad1/5/9 WE - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099462	ChIP-Seq/Transcription Factor/phospho-Smad1_5_9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Smad2/3 WE - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099466	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Smad2/3 WE - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099482,GSM3099483	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Smad2/3 WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099465	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Smad2/3 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099484,GSM3099485	ChIP-Seq/Transcription Factor/Smad2_3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Smad2/3 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099484,GSM3099485	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	sox3 WE - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099468	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	sox3 WE - NF12	ChIP-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3099469	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Sox3 tail bud - NF20	ChIP-Seq	NF20	tail bud	Gentsch GE et al. (2019)	GSM3099472	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Sox3 head - NF20	ChIP-Seq	NF20	head	Gentsch GE et al. (2019)	GSM3099470	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Sox3 trunk - NF20	ChIP-Seq	NF20	trunk	Gentsch GE et al. (2019)	GSM3099471	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Sox3 WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099467	ChIP-Seq/Transcription Factor/Sox3	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	Tbx6 WE - NF20	ChIP-Seq	NF20	embryo	Gentsch GE et al. (2019)	GSM3099475	ChIP-Seq/Transcription Factor/Tbx6	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	VegT WE - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099474	ChIP-Seq/Transcription Factor/vegt	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	VegT WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099473	ChIP-Seq/Transcription Factor/vegt	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF9 	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099549,GSM3099550,GSM3099551	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + ctnnb1 MO - NF9 	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099549,GSM3099550,GSM3099551	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF10	ChIP-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099505,GSM3099506,GSM3099507	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF11	ChIP-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3099508	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF12	ChIP-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3099509,GSM3099510	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF13	ChIP-Seq	NF13	embryo	Gentsch GE et al. (2019)	GSM3099511	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF20	ChIP-Seq	NF20	embryo	Gentsch GE et al. (2019)	GSM3099512	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input tail bud - NF20	ChIP-Seq	NF20	tail bud	Gentsch GE et al. (2019)	GSM3099515	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input head - NF20	ChIP-Seq	NF20	head	Gentsch GE et al. (2019)	GSM3099513	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input trunk - NF20	ChIP-Seq	NF20	trunk	Gentsch GE et al. (2019)	GSM3099514	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF6	ChIP-Seq	NF6	embryo	Gentsch GE et al. (2019)	GSM3099498	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF7	ChIP-Seq	NF7	embryo	Gentsch GE et al. (2019)	GSM3099499	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF8	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099500,GSM3099501	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF8 MBT	ChIP-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099502,GSM3099503	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	input WE - NF9	ChIP-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099504	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/ChIP-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099606,GSM3099607,GSM3099608	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099606,GSM3099607,GSM3099608	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	 WE + pou5f3.2 MO + pou5f3.3 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099603,GSM3099604,GSM3099605	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	 WE + pou5f3.2 MO + pou5f3.3 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099603,GSM3099604,GSM3099605	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099615,GSM3099616,GSM3099617	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099615,GSM3099616,GSM3099617	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099609,GSM3099610,GSM3099611	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099609,GSM3099610,GSM3099611	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099633,GSM3099634,GSM3099635	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099633,GSM3099634,GSM3099635	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099627,GSM3099628,GSM3099629	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099627,GSM3099628,GSM3099629	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099630,GSM3099631,GSM3099632	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + vegt MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099630,GSM3099631,GSM3099632	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099543,GSM3099544,GSM3099545	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099561,GSM3099562,GSM3099563	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099561,GSM3099562,GSM3099563	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099555,GSM3099556,GSM3099557	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099555,GSM3099556,GSM3099557	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099558,GSM3099559,GSM3099560	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099558,GSM3099559,GSM3099560	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099642,GSM3099643,GSM3099644	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099642,GSM3099643,GSM3099644	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099636,GSM3099637,GSM3099638	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099636,GSM3099637,GSM3099638	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099639,GSM3099640,GSM3099641	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE + hbg1 cMO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099639,GSM3099640,GSM3099641	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099537,GSM3099538,GSM3099539	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099540,GSM3099541,GSM3099542	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099570,GSM3099571,GSM3099572	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099564,GSM3099565,GSM3099566	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099567,GSM3099568,GSM3099569	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099624,GSM3099625,GSM3099626	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099618,GSM3099619,GSM3099620	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099621,GSM3099622,GSM3099623	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF10	RNA-Seq	NF10	embryo	Gentsch GE et al. (2019)	GSM3099651,GSM3099652,GSM3099653	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF8 MBT	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3099645,GSM3099646,GSM3099647	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
113186	George Gentsch	The role of maternal pioneer factors in predefining first zygotic responses to inductive signals	Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of a signal-receiving cel	George Gentsch, George Gentsch, James Smith	This study generated 202 samples of different applications of high-throughput sequencing inluding ChIP-Seq, DNase-Seq, next-generation capture-C and RNA-Seq.	31537794	56302	SRP140517	WE - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3099648,GSM3099649,GSM3099650	RNA-Seq/Whole Embryo/Blastula NF7 to NF9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE113186/XENTR_9.1/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + AGN193109 - NF10.5 (Batch 1)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358737,GSM3358739,GSM3358741,GSM3358743	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + TTNPB - NF10.5 (Batch 1)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358745,GSM3358747,GSM3358749,GSM3358751	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WE + EtOH - NF10.5 (Batch 1)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358753,GSM3358755,GSM3358757,GSM3358759	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + AGN193109 - NF10.5 (Batch 2)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358738,GSM3358740,GSM3358742,GSM3358744	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + TTNPB - NF10.5 (Batch 2)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358746,GSM3358748,GSM3358750,GSM3358752	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Readme.txt
119124	Toshi Shioda	RARγ is required for mesodermal gene expression prior to gastrulation	The developing vertebrate embryo is exquisitely sensitive to retinoic acid (RA) concentration, particularly during anteroposterior patterning. In cont	Toshi Shioda, Amanda Jenesick, Weiyi Tang, Bruce Blumberg	RNA-sequencing of gastrula stage embryos treated with RAR agonist TTNPB or RAR antagonist AGN193109	30111657	55309	SRP159000	WT + EtOH - NF10.5 (Batch 2)	RNA-Seq	NF10.5	embryo	Janesick A et al. (2018)	GSM3358754,GSM3358756,GSM3358758,GSM3358760	RNA-Seq/Whole Embryo/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE119124/XENLA_9.2/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE - NF8	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3473720	Whole Embryo/Blastula NF7 to 9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473721	Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	Input WE - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473723	Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	Input WE - NF8	RNA-Seq	NF8	embryo	Gentsch GE et al. (2019)	GSM3473722	Whole Embryo/Blastula NF7 to 9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473748,GSM3473749,GSM3473750,GSM3473751	Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473748,GSM3473749,GSM3473750,GSM3473751	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF11	RNA-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3473752,GSM3473753,GSM3473754,GSM3473755	Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF11	RNA-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3473752,GSM3473753,GSM3473754,GSM3473755	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF12	RNA-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3473756,GSM3473757,GSM3473758,GSM3473759	Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + eomes MO + vegt MO + tbxt MO + tbxt.2 MO - NF12	RNA-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3473756,GSM3473757,GSM3473758,GSM3473759	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473742,GSM3473743,GSM3473744	Whole Embryo/Blastula NF7 to 9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473742,GSM3473743,GSM3473744	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + SB431542 + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473745,GSM3473746,GSM3473747	Whole Embryo/Blastula NF7 to 9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + SB431542 + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473745,GSM3473746,GSM3473747	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473739,GSM3473740,GSM3473741	Whole Embryo/Blastula NF7 to 9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473739,GSM3473740,GSM3473741	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF12	RNA-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3473768,GSM3473769,GSM3473770,GSM3473771	Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF12	RNA-Seq	NF12	embryo	Gentsch GE et al. (2019)	GSM3473768,GSM3473769,GSM3473770,GSM3473771	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF11	RNA-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3473764,GSM3473765,GSM3473766,GSM3473767	Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF11	RNA-Seq	NF11	embryo	Gentsch GE et al. (2019)	GSM3473764,GSM3473765,GSM3473766,GSM3473767	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473760,GSM3473761,GSM3473762,GSM3473763	Whole Embryo/Gastrula NF10 to 12.5	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WT + hbg1 cMO - NF10.25	RNA-Seq	NF10.25	embryo	Gentsch GE et al. (2019)	GSM3473760,GSM3473761,GSM3473762,GSM3473763	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473724,GSM3473725,GSM3473726	Whole Embryo/Blastula NF7 to 9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473724,GSM3473725,GSM3473726	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473736,GSM3473737,GSM3473738	Whole Embryo/Blastula NF7 to 9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + SB431542 - NF9 	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473727,GSM3473728,GSM3473729	Whole Embryo/Blastula NF7 to 9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + SB431542 - NF9 	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473727,GSM3473728,GSM3473729	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + SB431542 - NF9 	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473727,GSM3473728,GSM3473729	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473730,GSM3473731,GSM3473732	Whole Embryo/Blastula NF7 to 9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473730,GSM3473731,GSM3473732	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473730,GSM3473731,GSM3473732	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473733,GSM3473734,GSM3473735	Whole Embryo/Blastula NF7 to 9	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473733,GSM3473734,GSM3473735	Manipulations/Morpholino	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
122551	George Gentsch	The Spatio-Temporal Control of Zygotic Genome Activation	One of the earliest and most significant events in embryonic development is zygotic genome activation (ZGA). In several species, bulk transcription be	George Gentsch, George Gentsch, James Smith	This study generated four 4sU-Seq samples and 48 RNA-Seq samples.	31229896	56693	SRP168643	WE + ctnnb1 MO + LDN193189 + SB431542 - NF9	RNA-Seq	NF9	embryo	Gentsch GE et al. (2019)	GSM3473733,GSM3473734,GSM3473735	Manipulations/Chemical	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE122551/XENTR_9.1/RNA-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587310	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587303,GSM3587304,GSM3587305	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587303,GSM3587304,GSM3587305	Manipulations/Protein	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587306,GSM3587307,GSM3587308	ChIP-Seq/Epigenetic/H3K27me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587306,GSM3587307,GSM3587308	Manipulations/Protein	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587297,GSM3587298,GSM3587299	ChIP-Seq/Epigenetic/input	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587297,GSM3587298,GSM3587299	Manipulations/Protein	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587300,GSM3587301,GSM3587302	ChIP-Seq/Epigenetic/input	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587300,GSM3587301,GSM3587302	Manipulations/Protein	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587309	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587291,GSM3587292,GSM3587293	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587291,GSM3587292,GSM3587293	Manipulations/Protein	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587294,GSM3587295,GSM3587296	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587294,GSM3587295,GSM3587296	Manipulations/Protein	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 WE - NF7	ChIP-Seq	NF7	embryo	Oikawa M et al. (2020)	GSM3671368,GSM3671369	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587285,GSM3587286,GSM3587287	ChIP-Seq/Epigenetic/input	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract + Gmnn - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587285,GSM3587286,GSM3587287	Manipulations/Protein	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587288,GSM3587289,GSM3587290	ChIP-Seq/Epigenetic/input	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm + egg extract - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587288,GSM3587289,GSM3587290	Manipulations/Protein	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input WE - NF7	ChIP-Seq	NF7	embryo	Oikawa M et al. (2020)	GSM3671366,GSM3671367	ChIP-Seq/Epigenetic/input	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	input sperm - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587279,GSM3587280	ChIP-Seq/Epigenetic/input	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K27me3 sperm - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587283,GSM3587284	ChIP-Seq/Epigenetic/H3K27me3 	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
125982	Angela Simeone	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Epigenetic homogeneity underlies sperm programming for embryonic transcriptionsingle-ended ChIP-Seq libraries from sperm, egg extract (-geminin) trea	Angela Simeone, Mami Oikawa, Eva Hormanseder, Marta Teperek, Clive D’Santos, Charles Bradshaw, Alan O’Doherthy, T Freour, L David, Adrian Grzybowski, Alexander Ruthenburg, John Gurdon, Jerome Jullien	30 samples, paired-ended and single-ended ChIP-Seq libraries from sperm, egg extract (-geminin) treated sperm, egg extract (+geminin) treated sperm, and St 7 embryos with antibody for H3Kme3, H3K27me3, 3 replicates for each histone modification pull-down.
-------------------------------------------------
*The authors state the following regarding the human raw data: "We don't have the required patient consents to deposit them".  Thus, this submission is incomplete.	0	57326	SRP183098	H3K4me3 sperm - adult frog	ChIP-Seq	adult 	spermatozoon	Oikawa M et al. (2020)	GSM3587281,GSM3587282	ChIP-Seq/Epigenetic/H3K4me3	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE125982/XENLA_9.2/ChIP-Seq/Readme.txt
131962	Matthew Good	Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages	To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using 	Matthew Good, Hui Chen, Matthew Good	Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively	31211992	56041	SRP199866	WE - NF9	RNA-Seq	NF9	embryo	Chen H et al. (2019)	GSM3832851,GSM3832852	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq/Readme.txt
131962	Matthew Good	Nascent transcriptome of Xenopus laevis embryos at mid-blastula transition (MBT) stages	To validate that EU-RNA imaging provides a direct readout of wide-spread zygotic transcription, we sought to identify the nascent transcriptome using 	Matthew Good, Hui Chen, Matthew Good	Duplicates for nascent EU-RNA from EU-injected embryos and total RNA from normal embryos, respectively	31211992	56041	SRP199866	WE + 5-EU - NF9	RNA-Seq	NF9	embryo	Chen H et al. (2019)	GSM3832849,GSM3832850	None	laevis	XL92	XENLA_9.2	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131962/XENLA_9.2/RNA-Seq/Readme.txt
138905	Peter Klein	ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis	In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of	Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein	ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula).	0	56750	SRP225796	Animal cap - NF10	ATAC-Seq	NF10	animal cap	Esmaeili M et al. (2020)	GSM4121478,GSM4121479,GSM4121480	ATAC-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq/Readme.txt
138905	Peter Klein	ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis	In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of	Peter Klein, Jing Yang, Kai Zhang, Melody Esmaeili, Peter Klein	ATAC-seq performed on ectodermal explants from stage 10 (early gastrula) and stage 12 (late gastrula).	0	56750	SRP225796	Animal cap - NF12	ATAC-Seq	NF12	animal cap	Esmaeili M et al. (2020)	GSM4121481,GSM4121482,GSM4121483	ATAC-Seq/Embryonic Tissues/Gastrula NF10 to 12.5	laevis	XL92	XENLA_9.2	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE138905/XENLA_9.2/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF41	ATAC-Seq	NF41	whole organism	Kakebeen AD et al. (2020)	GSM4407623,GSM4407624	Manipulations/Other	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF41	ATAC-Seq	NF41	whole organism	Kakebeen AD et al. (2020)	GSM4407623,GSM4407624	ATAC-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF45	ATAC-Seq	NF45	whole organism	Kakebeen AD et al. (2020)	GSM4407628,GSM4407629,GSM4407630	Manipulations/Other	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF45	ATAC-Seq	NF45	whole organism	Kakebeen AD et al. (2020)	GSM4407628,GSM4407629,GSM4407630	ATAC-Seq/Whole Embryo/Tadpole NF45 to NF65	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF42	ATAC-Seq	NF42	whole organism	Kakebeen AD et al. (2020)	GSM4407625,GSM4407626,GSM4407627	Manipulations/Other	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF42	ATAC-Seq	NF42	whole organism	Kakebeen AD et al. (2020)	GSM4407625,GSM4407626,GSM4407627	ATAC-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE - NF41	ATAC-Seq	NF41	whole organism	Kakebeen AD et al. (2020)	GSM4407619,GSM4407620,GSM4407621,GSM4407622	ATAC-Seq/Whole Embryo/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF47	ATAC-Seq	NF47	whole organism	Kakebeen AD et al. (2020)	GSM4407631,GSM4407632,GSM4407633,GSM4407634	Manipulations/Other	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	WE + posterior tail amputation - NF47	ATAC-Seq	NF47	whole organism	Kakebeen AD et al. (2020)	GSM4407631,GSM4407632,GSM4407633,GSM4407634	ATAC-Seq/Whole Embryo/Tadpole NF45 to NF65	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	posterior tail - NF41 Pax6+	ATAC-Seq	NF41		Kakebeen AD et al. (2020)	GSM4407635,GSM4407636,GSM4407637	Manipulations/Other	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	posterior tail - NF41 Pax6+	ATAC-Seq	NF41		Kakebeen AD et al. (2020)	GSM4407635,GSM4407636,GSM4407637	ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF41 Pax6+	ATAC-Seq	NF41	regenerating tail	Kakebeen AD et al. (2020)	GSM4407638,GSM4407639,GSM4407640	Manipulations/Other	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF41 Pax6+	ATAC-Seq	NF41	regenerating tail	Kakebeen AD et al. (2020)	GSM4407638,GSM4407639,GSM4407640	ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF42 Pax6+	ATAC-Seq	NF42	regenerating tail	Kakebeen AD et al. (2020)	GSM4407641,GSM4407642,GSM4407643	Manipulations/Other	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF42 Pax6+	ATAC-Seq	NF42	regenerating tail	Kakebeen AD et al. (2020)	GSM4407641,GSM4407642,GSM4407643	ATAC-Seq/Embryonic Tissues/Tailbud NF22 to NF44	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF45 Pax6+	ATAC-Seq	NF45	regenerating tail	Kakebeen AD et al. (2020)	GSM4407644,GSM4407645,GSM4407646	Manipulations/Other	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF45 Pax6+	ATAC-Seq	NF45	regenerating tail	Kakebeen AD et al. (2020)	GSM4407644,GSM4407645,GSM4407646	ATAC-Seq/Whole Embryo/Tadpole NF45 to NF65	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF47 Pax6+	ATAC-Seq	NF47	regenerating tail	Kakebeen AD et al. (2020)	GSM4407647,GSM4407648,GSM4407649	Manipulations/Other	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146830	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, Kakebeen Anneke, Chitsazan Alex	Investigation of chromatin accessiblity dynamics in neural progenitor cells over the course of tadpole tail regeneration	0	56933	SRP252458	regenerating tail + posterior tail amputation - NF47 Pax6+	ATAC-Seq	NF47	regenerating tail	Kakebeen AD et al. (2020)	GSM4407647,GSM4407648,GSM4407649	ATAC-Seq/Whole Embryo/Tadpole NF45 to NF65	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146830/XENTR_9.1/ATAC-Seq/Readme.txt
146836	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, A Kakebeen, A Wills	Single-cell RNA-seq experiments were performed on the 10X Genom+D:Dics platform from FAC sorted, pax6:GFP positive cells from uninjured stage 41 Xenopus tropicalis tadpoles and 24 hours post amputation regenerated tail tissue.	0	56933	SRP252466	posterior tail - NF41	RNA-Seq	NF41		Kakebeen AD et al. (2020)	GSM4407688	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq/Readme.txt
146836	Anneke Kakebeen	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Vertebrate appendage regeneration requires precisely coordinated remodeling of the transcriptional landscape to enable the growth and differentiation 	Anneke Kakebeen, A Kakebeen, A Wills	Single-cell RNA-seq experiments were performed on the 10X Genom+D:Dics platform from FAC sorted, pax6:GFP positive cells from uninjured stage 41 Xenopus tropicalis tadpoles and 24 hours post amputation regenerated tail tissue.	0	56933	SRP252466	regenerating tail - NF45	RNA-Seq	NF45	regenerating tail	Kakebeen AD et al. (2020)	GSM4407689	None	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE146836/XENTR_9.1/RNA-Seq/Readme.txt
149538	Arthur Willsey	Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos	DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In 	Arthur Willsey, Helen Willsey, A Willsey	3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing.	32467234	57038	SRP258988	brain + dyrk1a CRISPR - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2020)	GSM4504552,GSM4504553,GSM4504554	Manipulations/Other	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/Readme.txt
149538	Arthur Willsey	Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos	DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In 	Arthur Willsey, Helen Willsey, A Willsey	3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing.	32467234	57038	SRP258988	brain + dyrk1a CRISPR - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2020)	GSM4504552,GSM4504553,GSM4504554	RNA-Seq/Embryonic Tissues/Tadpole NF45 - 65	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/Readme.txt
149538	Arthur Willsey	Neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and brain size in Xenopus embryos	DYRK1A (dual specificity tyrosine-(Y)-phosphorylation-regulated kinase 1 A) is a high confidence autism risk gene that encodes a conserved kinase. In 	Arthur Willsey, Helen Willsey, A Willsey	3 replicates each of 3 pooled dissected stage 46 X. tropicalis brains, either uninjected or bilaterally injected with CRISPR reagents targeting dyrk1a at the 2 cell stage. Trizol extracted RNA, low yield library preparation, and Illumina sequencing.	32467234	57038	SRP258988	brain - NF46	RNA-Seq	NF46	brain	Willsey HR et al. (2020)	GSM4504555,GSM4504556,GSM4504557	RNA-Seq/Embryonic Tissues/Tadpole NF45 - 65	tropicalis	XT91	XENTR_9.1	Curation Complete|PL Done|Loader Done	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE149538/XENTR_9.1/RNA-Seq/Readme.txt
