35876	Jonas Maaskola	Select microRNAs are essential for early development in the sea urchin.	microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop	Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel	Small RNA expression profiling in early sea urchin development	22155525	42264	SRP010973	WE 32-cell stage	RNA-Seq	32-cell stage		Song JL et al. (2012)	GSM877249	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt
35876	Jonas Maaskola	Select microRNAs are essential for early development in the sea urchin.	microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop	Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel	Small RNA expression profiling in early sea urchin development	22155525	42264	SRP010973	blastula WE	RNA-Seq			Song JL et al. (2012)	GSM877250	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt
35876	Jonas Maaskola	Select microRNAs are essential for early development in the sea urchin.	microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop	Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel	Small RNA expression profiling in early sea urchin development	22155525	42264	SRP010973	oocyte	RNA-Seq			Song JL et al. (2012)	GSM877248	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt
35876	Jonas Maaskola	Select microRNAs are essential for early development in the sea urchin.	microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop	Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel	Small RNA expression profiling in early sea urchin development	22155525	42264	SRP010973	gastrula WE	RNA-Seq			Song JL et al. (2012)	GSM877251	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt
35876	Jonas Maaskola	Select microRNAs are essential for early development in the sea urchin.	microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop	Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel	Small RNA expression profiling in early sea urchin development	22155525	42264	SRP010973	ovary	RNA-Seq			Song JL et al. (2012)	GSM877247	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt
35876	Jonas Maaskola	Select microRNAs are essential for early development in the sea urchin.	microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop	Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel	Small RNA expression profiling in early sea urchin development	22155525	42264	SRP010973	pluteus WE	RNA-Seq			Song JL et al. (2012)	GSM877252	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt
38606	Daniel Runcie	Genetics of gene expression responses to temperature stress in a sea urchin gene network (HTS)	Stress responses play an important role in shaping species distributions and robustness to climate change. We investigated how stress responses alter 	Daniel Runcie, Daniel Runcie, David Garfield, Courtney Babbitt, Jennifer Wygoda, Sayan Mukherjee, Gregory Wray	7 RNAseq samples representing embryos grown at 2 temperatures, from 3 female parents and 2 male parents	22856327	42522	SRP013629	WE (12 C)	RNA-Seq			Runcie DE et al. (2012)	GSM946009,GSM946010,GSM946011	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/Readme.txt
38606	Daniel Runcie	Genetics of gene expression responses to temperature stress in a sea urchin gene network (HTS)	Stress responses play an important role in shaping species distributions and robustness to climate change. We investigated how stress responses alter 	Daniel Runcie, Daniel Runcie, David Garfield, Courtney Babbitt, Jennifer Wygoda, Sayan Mukherjee, Gregory Wray	7 RNAseq samples representing embryos grown at 2 temperatures, from 3 female parents and 2 male parents	22856327	42522	SRP013629	WE (18 C)	RNA-Seq			Runcie DE et al. (2012)	GSM946005,GSM946006,GSM946007,GSM946008	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/Readme.txt
38644	Daniel Runcie	Genetics of gene expression responses to temperature stress in a sea urchin gene network (DASL)	Stress responses play an important role in shaping species distributions and robustness to climate change. We investigated how stress responses alter 	Daniel Runcie, Daniel Runcie, David Garfield, Courtney Babbitt, Jennifer Wygoda, Sayan Mukherjee, Gregory Wray	191 samples representing 32 cultures from 8 male and 8 female parents, grown in replicate at 3 temperatures	22856327	42522		WE (12 C)	microarray			Runcie DE et al. (2012)	GSM730036,GSM730037,GSM730038,GSM730039,GSM730040,GSM730041,GSM730042,GSM730043,GSM730044,GSM730045,GSM730046,GSM730047,GSM730048,GSM730049,GSM730050,GSM730051,GSM730052,GSM730053,GSM730054,GSM730055,	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Readme.txt
38644	Daniel Runcie	Genetics of gene expression responses to temperature stress in a sea urchin gene network (DASL)	Stress responses play an important role in shaping species distributions and robustness to climate change. We investigated how stress responses alter 	Daniel Runcie, Daniel Runcie, David Garfield, Courtney Babbitt, Jennifer Wygoda, Sayan Mukherjee, Gregory Wray	191 samples representing 32 cultures from 8 male and 8 female parents, grown in replicate at 3 temperatures	22856327	42522		WE (15 C)	microarray			Runcie DE et al. (2012)	GSM730098,GSM730099,GSM730100,GSM730101,GSM730102,GSM730103,GSM730104,GSM730105,GSM730106,GSM730107,GSM730108,GSM730109,GSM730110,GSM730111,GSM730112,GSM730113,GSM730114,GSM730115,GSM730116,GSM730117,	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Readme.txt
38644	Daniel Runcie	Genetics of gene expression responses to temperature stress in a sea urchin gene network (DASL)	Stress responses play an important role in shaping species distributions and robustness to climate change. We investigated how stress responses alter 	Daniel Runcie, Daniel Runcie, David Garfield, Courtney Babbitt, Jennifer Wygoda, Sayan Mukherjee, Gregory Wray	191 samples representing 32 cultures from 8 male and 8 female parents, grown in replicate at 3 temperatures	22856327	42522		WE (18 C)	microarray			Runcie DE et al. (2012)	GSM730068,GSM730069,GSM730070,GSM730071,GSM730072,GSM730073,GSM730074,GSM730075,GSM730076,GSM730077,GSM730078,GSM730079,GSM730080,GSM730081,GSM730082,GSM730083,GSM730084,GSM730085,GSM730086,GSM730087,	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Readme.txt
76067	Robert Angerer	Gene expression alterations in SoxC knockdown sea urchin embryos	Transcription factor SoxC is required for all neural development in purple sea urchin S. purpuratus embryos. To begin to develop a gene regulatory net	Robert Angerer, Zheng Wei, Lynne Angerer, Robert Angerer	SoxC function was knocked down by morpholino oligo injection. RNA from about 1000 embryos were collected for both control and knockdown samples.	26657764	44383	SRP067439	WE (glycerol)	RNA-Seq			Wei Z et al. (2016)	GSM1973611	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/Readme.txt
76067	Robert Angerer	Gene expression alterations in SoxC knockdown sea urchin embryos	Transcription factor SoxC is required for all neural development in purple sea urchin S. purpuratus embryos. To begin to develop a gene regulatory net	Robert Angerer, Zheng Wei, Lynne Angerer, Robert Angerer	SoxC function was knocked down by morpholino oligo injection. RNA from about 1000 embryos were collected for both control and knockdown samples.	26657764	44383	SRP067439	WE (sox4 MO)	RNA-Seq			Wei Z et al. (2016)	GSM1973612	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/Readme.txt
89862	Gregory Cary	Genome-wide detection of Tbrain binding sites during early development in both sea urchin (S. purpuratus) and sea star (P. miniata)	Sea stars and sea urchins are model systems for interrogating the types of deep evolutionary changes that have restructured developmental gene regulat	Gregory Cary, Gregory Cary, Veronica Hinman	Chromatin immunoprecipiation was performed using custom antibodies raised against either the sea urchin or the sea star protein. One biological replicate each, prepared by pooling chromatin from 2-3 independently fertilized cultures prior to immunoprecipitation, was used. Input and immunoprecipitated chromatin was sequenced for each species.	28584099	45554	SRP096048	T-box brain transcription factor 1 WE - mid-gastrula stage	ChIP-Seq			Cary GA et al. (2017)	GSM2391746	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Partial Manual Curation|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Readme.txt
89862	Gregory Cary	Genome-wide detection of Tbrain binding sites during early development in both sea urchin (S. purpuratus) and sea star (P. miniata)	Sea stars and sea urchins are model systems for interrogating the types of deep evolutionary changes that have restructured developmental gene regulat	Gregory Cary, Gregory Cary, Veronica Hinman	Chromatin immunoprecipiation was performed using custom antibodies raised against either the sea urchin or the sea star protein. One biological replicate each, prepared by pooling chromatin from 2-3 independently fertilized cultures prior to immunoprecipitation, was used. Input and immunoprecipitated chromatin was sequenced for each species.	28584099	45554	SRP096048	T-box brain transcription factor 1 WE - mid-gastrula stage	ChIP-Seq			Cary GA et al. (2017)	GSM2391746	ChIP-Seq/Transcription Factor/tbr	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Partial Manual Curation|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Readme.txt
89862	Gregory Cary	Genome-wide detection of Tbrain binding sites during early development in both sea urchin (S. purpuratus) and sea star (P. miniata)	Sea stars and sea urchins are model systems for interrogating the types of deep evolutionary changes that have restructured developmental gene regulat	Gregory Cary, Gregory Cary, Veronica Hinman	Chromatin immunoprecipiation was performed using custom antibodies raised against either the sea urchin or the sea star protein. One biological replicate each, prepared by pooling chromatin from 2-3 independently fertilized cultures prior to immunoprecipitation, was used. Input and immunoprecipitated chromatin was sequenced for each species.	28584099	45554	SRP096048	input WE - mid-gastrula stage	ChIP-Seq			Cary GA et al. (2017)	GSM2391747	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Partial Manual Curation|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Readme.txt
96927	Charles Ettensohn	Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage	We used DNase-seq and ATAC-seq to identify a set of putative CRMs regulating skeletogenic gene expression during sea urchin embryogenesis. These CRMs,	Charles Ettensohn, Tanvi Shashikant, Jian-Ming Khor	DNase-seq performed on U0126-treated PMC(-) S. purpuratus embryos at 28 hpf and control whole embryos at 28 hpf. There are 2 samples and 3 replicates for each sample. ATAC-seq was performed on isolated PMCs at 24 hpf and other non-PMC cells of the embryo at 24 hpf. There were 2 samples and 2 replicates per sample.	29558892	46197	SRP102309	WE (Control)	DNase-Seq			Shashikant T et al. (2018)	GSM2546188,GSM2546189,GSM2546190	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/Readme.txt
96927	Charles Ettensohn	Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage	We used DNase-seq and ATAC-seq to identify a set of putative CRMs regulating skeletogenic gene expression during sea urchin embryogenesis. These CRMs,	Charles Ettensohn, Tanvi Shashikant, Jian-Ming Khor	DNase-seq performed on U0126-treated PMC(-) S. purpuratus embryos at 28 hpf and control whole embryos at 28 hpf. There are 2 samples and 3 replicates for each sample. ATAC-seq was performed on isolated PMCs at 24 hpf and other non-PMC cells of the embryo at 24 hpf. There were 2 samples and 2 replicates per sample.	29558892	46197	SRP102309	Non-PMCs	ATAC-Seq			Shashikant T et al. (2018)	GSM2546193,GSM2546194	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/Readme.txt
96927	Charles Ettensohn	Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage	We used DNase-seq and ATAC-seq to identify a set of putative CRMs regulating skeletogenic gene expression during sea urchin embryogenesis. These CRMs,	Charles Ettensohn, Tanvi Shashikant, Jian-Ming Khor	DNase-seq performed on U0126-treated PMC(-) S. purpuratus embryos at 28 hpf and control whole embryos at 28 hpf. There are 2 samples and 3 replicates for each sample. ATAC-seq was performed on isolated PMCs at 24 hpf and other non-PMC cells of the embryo at 24 hpf. There were 2 samples and 2 replicates per sample.	29558892	46197	SRP102309	PMCs	ATAC-Seq			Shashikant T et al. (2018)	GSM2546191,GSM2546192	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/Readme.txt
96927	Charles Ettensohn	Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage	We used DNase-seq and ATAC-seq to identify a set of putative CRMs regulating skeletogenic gene expression during sea urchin embryogenesis. These CRMs,	Charles Ettensohn, Tanvi Shashikant, Jian-Ming Khor	DNase-seq performed on U0126-treated PMC(-) S. purpuratus embryos at 28 hpf and control whole embryos at 28 hpf. There are 2 samples and 3 replicates for each sample. ATAC-seq was performed on isolated PMCs at 24 hpf and other non-PMC cells of the embryo at 24 hpf. There were 2 samples and 2 replicates per sample.	29558892	46197	SRP102309	WE (U0126)	DNase-Seq			Shashikant T et al. (2018)	GSM2546185,GSM2546186,GSM2546187	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Partial Manual Curation|PL Wait|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/Readme.txt
131370	Jian Ming Khor	Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis	ChIP-seq provides a genome-wide view of the binding sites of Alx1, a pivotal transcription factor in a gene regulatory network that controls skeletoge	Jian Ming Khor, Charles Ettensohn	Three independent cultures of S. purpuratus were collected and processed at the mesenchyme blastula stage (24 hpf). For each culture, ChIP was performed using α-Sp-Alx1 and normal rabbit IgG (Sigma-Aldrich, Cat. No. 12370) was used for mock IP.	31331943	47332	SRP198689	WE (normal rabbit IgG)	ChIP-Seq			Khor JM et al. (2019)	GSM3772833	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/Readme.txt
131370	Jian Ming Khor	Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis	ChIP-seq provides a genome-wide view of the binding sites of Alx1, a pivotal transcription factor in a gene regulatory network that controls skeletoge	Jian Ming Khor, Charles Ettensohn	Three independent cultures of S. purpuratus were collected and processed at the mesenchyme blastula stage (24 hpf). For each culture, ChIP was performed using α-Sp-Alx1 and normal rabbit IgG (Sigma-Aldrich, Cat. No. 12370) was used for mock IP.	31331943	47332	SRP198689	WE (alx1 Ab2)	ChIP-Seq			Khor JM et al. (2019)	GSM3772832	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/Readme.txt
198320	Maria Ina Arnone	An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens	Transcription factor brachyury plays a key role during mesoderm development in vertebrates. In this study we study study the effect of this transcript	Maria Ina Arnone, Carmen Andrikou, Danila Voronov, Rohit Dnyansagar, Michaela Schwaiger, Periklis Paganos, Ulrich Technau	Brachyury binding sites were identified with ChIP-seq and effect of brachyury binding on gene expression was studied with RNA-seq.	0	51284		WE (RNA-Seq)	RNA-Seq				GSM5945021,GSM5945022,GSM5945023	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/Readme.txt
198320	Maria Ina Arnone	An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens	Transcription factor brachyury plays a key role during mesoderm development in vertebrates. In this study we study study the effect of this transcript	Maria Ina Arnone, Carmen Andrikou, Danila Voronov, Rohit Dnyansagar, Michaela Schwaiger, Periklis Paganos, Ulrich Technau	Brachyury binding sites were identified with ChIP-seq and effect of brachyury binding on gene expression was studied with RNA-seq.	0	51284		WE (RNA-Seq) (tbxt MO)	RNA-Seq				GSM5945024,GSM5945025,GSM5945026	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/Readme.txt
198320	Maria Ina Arnone	An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens	Transcription factor brachyury plays a key role during mesoderm development in vertebrates. In this study we study study the effect of this transcript	Maria Ina Arnone, Carmen Andrikou, Danila Voronov, Rohit Dnyansagar, Michaela Schwaiger, Periklis Paganos, Ulrich Technau	Brachyury binding sites were identified with ChIP-seq and effect of brachyury binding on gene expression was studied with RNA-seq.	0	51284		WE (ChIP-Seq (tbxt Ab1))	ChIP-Seq				GSM5945027,GSM5945028	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/Readme.txt
198320	Maria Ina Arnone	An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens	Transcription factor brachyury plays a key role during mesoderm development in vertebrates. In this study we study study the effect of this transcript	Maria Ina Arnone, Carmen Andrikou, Danila Voronov, Rohit Dnyansagar, Michaela Schwaiger, Periklis Paganos, Ulrich Technau	Brachyury binding sites were identified with ChIP-seq and effect of brachyury binding on gene expression was studied with RNA-seq.	0	51284		WE (ChIP-Seq (input))	ChIP-Seq				GSM5945029,GSM5945030	None	Strongylocentrotus purpuratus	SP50	STRPU_5.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/Readme.txt
207100	Cynthia Bradham	Ethanol-treated Lytechinus variegatus (sea urchin) embryos	The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation.              	Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham	Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf.	0	51285		WE (15 hpf)	RNA-Seq				GSM6278508,GSM6278514,GSM6278520	None	Lytechinus variegatus	LV30	LYTVA_3.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt
207100	Cynthia Bradham	Ethanol-treated Lytechinus variegatus (sea urchin) embryos	The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation.              	Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham	Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf.	0	51285		WE (18 hpf)	RNA-Seq				GSM6278510,GSM6278516,GSM6278522	None	Lytechinus variegatus	LV30	LYTVA_3.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt
207100	Cynthia Bradham	Ethanol-treated Lytechinus variegatus (sea urchin) embryos	The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation.              	Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham	Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf.	0	51285		WE (15 hpf) (EtOH)	RNA-Seq				GSM6278509,GSM6278515,GSM6278521	None	Lytechinus variegatus	LV30	LYTVA_3.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt
207100	Cynthia Bradham	Ethanol-treated Lytechinus variegatus (sea urchin) embryos	The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation.              	Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham	Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf.	0	51285		WE (18 hpf) (EtOH)	RNA-Seq				GSM6278511,GSM6278517,GSM6278523	None	Lytechinus variegatus	LV30	LYTVA_3.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt
207100	Cynthia Bradham	Ethanol-treated Lytechinus variegatus (sea urchin) embryos	The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation.              	Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham	Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf.	0	51285		WE (21 hpf)	RNA-Seq				GSM6278512,GSM6278518,GSM6278524	None	Lytechinus variegatus	LV30	LYTVA_3.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt
207100	Cynthia Bradham	Ethanol-treated Lytechinus variegatus (sea urchin) embryos	The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation.              	Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham	Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf.	0	51285		WE (21 hpf) (EtOH)	RNA-Seq				GSM6278513,GSM6278519,GSM6278525	None	Lytechinus variegatus	LV30	LYTVA_3.0	Curation Complete|PL Ready|Loader Wait	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks	ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt
