All files in the this location "General/annotation" are the tab delimitered data files for database "annotation"--

cds_table.txt--data for "cds_table" in annotation database; same with release 4.
****column header:
spu_id
cds_header
cds_seq


mrna_table.txt--data for "mrna_table" in annotation database; same with release 4.
****column header:
spu_id
mrna_header
mrna_seq


peptide_table.txt--data for "peptide_table" in annotation database; same with release 4.
****column header:
spu_id
pep_header
pep_seq


comment_table.txt--data for "comment_table" in annotation database; modfied and updated from release 4.
****column header:
glean_id
spu_id
v2_1comment
v0_5comment


expression_table.txt--data for "expression_table" in annotation database; expression data from baylor Freeze 5. same with release 4.
****column header:
spu_id
time
domain


feature_table.txt--data for "feature_table" in annotation database; new table with gene feature for version 2.5.
****column header:
scaffold
source
feature
gene_start
gene_end
score
strand
frame
spu_id


functional_category_table.txt--data for "functional_category_table" in annotation database; new table with data from Qiang Tu.
****column header:
spu_id
class
sub_class
anno_type


gene_info_table.txt--data for "gene_info_table" in annotation database; modfied and updated from release 4.
****column header:
glean_id
spu_id
annotator
gene_model_check
additional_evidence
family_member
common_name
synonyms
best_genebank_hit
ortholog_homolog
group_coordinator
difficult_annotation_categories
old_common_name
duplicate
manual_anno
annotation_type
overlap_gene


go_table.txt--data for "go_table" in annotation database; modfied and updated from release 4.
****column header:
spu_id
ot_type
ot_data
go_num
evidence_code


input_user_table.txt--data for "input_user_table" in annotation database; same with release 4.
****column header:
firstname
middlename
lastname
institute
pi_fname
pi_lname
phone
email
pwd


qpcr_timecourse_table--data for "qpcr_timecourse_table" in annotation database; new table.
****column header:
spu_id
timepoint
timeunit
express_level


reagent_table--data for "reagent_table" in annotation database; new table.    
****column header:
spu_id
q_primername_f
q_primername_r
q_primerseq_f
q_primerseq_r
q_amplicon
w_primername_f
w_primername_r
w_primerseq_f
w_primerseq_r

    
reference_table--data for "reference_table" in annotation database; modfied and updated from release 4.
****column header:
spu_id
pmid
pm_link

     
spatial_expression_table--data for "spatial_expression_table" in annotation database; new tabl with spatial expression data for new format table.
****column header:
spu_id
space_time
expression
confidence


stefan_genelist_table--data for "stefan_genelist_table" in annotation database; new table with all genes exist in Stefan's plot website.
****column header:
spu_id
hasdata

