GenePageReports file descriptions: FTP_FILE_INVENTORY ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1) GenePageGeneralInfo_ManuallyCurated.txt File contains general information on all the manually curated gene pages in Xenbase. TSV XenbaseGenePageDump.pl perl Xenbase gene ID|gene symbol|gene name|gene function|gene synonyms|JGI ID 2) GenePageToJgiTropicalisScaffoldMapping_4.1.txt File contains a mapping of all Xenbase gene pages to their parent 4.1 JGI models TSV GenePageToJgiTropicalisScaffoldMapping_4.pl perl Xenbase gene ID|gene symbol|JGI Model Name|JGI Scaffold Name|JGI Scaffold Start Position|JGI Scaffold End Position|JGI Scaffold Strand 3) GenePageNcbiEstMapping_laevis.txt File contains a mapping of NCBI Xenopus laevis ESTs to Xenbase gene pages TSV GenePageNcbiEstMapping_laevis.pl perl Xenbase gene ID|gene symbol|NCBI ESTs ESTs are presented with the format: accession,evalue. Each EST is separated by a | pipe symbol. 4) GenePageNcbiEstMapping_tropicalis.txt File contains a mapping of NCBI Xenopus tropicalis ESTs to Xenbase gene pages TSV GenePageNcbiEstMapping_tropicalis.pl perl Xenbase gene ID|gene symbol|NCBI ESTs ESTs are presented with the format: accession,evalue. Each EST is separated by a | pipe symbol. 5) GenePageAffymetrix_tropicalis1.0.txt File contains a mapping of Affymetrix 1.0 expression IDs to Xenbase gene pages TSV GenePageAffymetrix_tropicalis1.pl perl Xenbase gene ID|gene symbol|Affymetrix IDs Affymetrix IDs for a given gene page are comma-separated 6) GenePageAffymetrix_laevis1.0.txt File contains a mapping of Affymetrix 1.0 expression IDs to Xenbase gene pages TSV GenePageAffymetrix_laevis1.pl perl Xenbase gene ID|gene symbol|Affymetrix IDs Affymetrix IDs for a given gene page are comma-separated 7) GenePageInteractants.txt File contains a list of gene interactants for each gene page in Xenbase based on co-citation in the literature. TSV GenePageInteractants.pl perl Xenbase gene ID|gene symbol|interactant|ID:interactant symbol:co-citation occurrence Interactants for a given gene page are comma-separated 8) GenePageTropicalisEntrezGeneUnigeneMapping.txt File contains a mapping of Xenopus tropicalis NCBI Entrez Gene and Unigene IDs for each gene page in Xenbase TSV GenePageTropicalisEntrezGeneUnigeneMapping.pl perl Xenbase gene ID|gene symbol|Entrez Gene ID|Unignene ID 9) GenePageLaevisEntrezGeneUnigeneMapping.txt File contains a mapping of Xenopus laevis NCBI Entrez Gene and Unigene IDs for each gene page in Xenbase TSV GenePageLaevisEntrezGeneUnigeneMapping.pl perl Xenbase gene ID|gene symbol|Entrez Gene ID|Unignene ID 10) GenePageAnatomyOntologyMapping.txt File contains a mapping of Xenbase gene pages to Xenopus Anatomy Ontology (XAO) development stages and tissues. The anatomy data is pooled from the tropicalis and laevis frog species. Expression data is obtained from cDNA libraries as well as images from large scale screens, community submissions and publications TSV GenePageAnatomyOntologyMapping.pl perl Xenbase gene ID|gene symbol|start stage|end stage|tissues Stage information is provided as a range from the earliest point of expression to the latest Tissues are provided as a comma-separated list 11) GenePageEnsemblModelMapping.txt File contains a mapping of Xenbase gene pages to Ensembl Xentr4.1 models. TSV EnsemblGenePageMapping.pl perl Xenbase gene ID|gene symbol|Ensembl model name 12) XenbaseGeneModels.gff3.gz All of the Xenopus tropicalis genemodels from Xentr 4.1 dumped out in GFF3 format GFF3 XenbaseGeneModels.pl perl 13) GeneExpression_tropicalis.txt File contains a listing of expression patterns for xenopus tropicalis. TSV GeneExpression_tropicalis.pl perl Xenbase gene ID|gene symbol|genotype|anatomical tissue|start stage|end stage|assay|evidence ID(image ID)|experiment ID|literature ID|source|curation status Note that the fields 'anatomical tissue', 'start stage' and 'end stage' are of the format 'XAO_ID XAO_Name' 14) GeneExpression_laevis.txt File contains a listing of expression patterns for xenopus laevis. TSV GeneExpression_laevis.pl perl Xenbase gene ID|gene symbol|genotype|anatomical tissue|start stage|end stage|assay|evidence ID(image ID)|experiment ID|literature ID|source|curation status Note that the fields 'anatomical tissue', 'start stage' and 'end stage' are of the format 'XAO_ID XAO_Name' 15) TropicalisGenePages_NoModel.txt File contains a listing of Xenbase gene pages created using an NCBI xenopus tropicalis Entrez Gene entry as a seed. These gene pages have no genomic gene model associated with them. These models will contain, where applicable, xenopus laevis gene data. TSV TropicalisGenePages_NoModel.pl perl Xenbase gene ID|gene symbol|tropicalis unigene ID|tropicalis Entrez Gene ID 16) LaevisGenePages_NoModel.txt File contains a listing of Xenbase gene pages created using an NCBI xenopus laevis Entrez Gene entry as a seed. These pages have no genomic gene model and no corresponding xenopus tropicalis genetic data associated with them. TSV LaevisGenePages_NoModel.pl perl Xenbase gene ID|gene symbol|laevis unigene ID|laevis Entrez Gene ID 17) XenbaseGenePage_JgiModel_Transcripts.gz File contains a list of JGI 4.1 transcript sequences associated with Xenbase gene pages. fasta XenbaseGenePage_JgiModel_Transcripts.pl perl >JGI transcript ID|JGI model name|Xenbase gene page ID|Xenbase gene page symbol 18) NcbiProteinXenbaseGene_tropicalis.txt File contains a list of NCBI tropicalis proteins mapped to the appropriate Xenbase genepage ID TSV NcbiProteinXenbaseGene_tropicalis.pl perl gi|accession|Xenbase gene ID|Xenbase gene symbol 19) NcbiProteinXenbaseGene_laevis.txt File contains a list of NCBI laevis proteins mapped to the appropriate Xenbase genepage ID TSV NcbiProteinXenbaseGene_laevis.pl perl gi|accession|Xenbase gene ID|Xenbase gene symbol 20) NcbiMrnaXenbaseGene_tropicalis.txt File contains a list of NCBI tropicalis mRNAs mapped to the appropriate Xenbase genepage ID. TSV NcbiMrnaXenbaseGene_tropicalis.pl perl gi|accession|Xenbase gene ID|Xenbase gene symbol 21) NcbiMrnaXenbaseGene_laevis.txt File contains a list of NCBI laevis mRNAs mapped to the appropriate Xenbase genepage ID TSV NcbiMrnaXenbaseGene_laevis.pl perl gi|accession|Xenbase gene ID|Xenbase gene symbol 22) GeneGoTerms.txt File contains a list of XB-GENE IDs mapped to GO terms TSV GeneGoTerms.pl perl Xenbase gene ID|gene symbol|GO Ids The list of GO IDs is comma separated 23) XenbaseGeneHumanOrthologMapping.txt File contains a mapping of XB-GENEPAGE IDs and annotation to human Entrez Gene IDs TSV XenbaseGeneHumanOrthologMapping.pl perl Human Entrez Gene ID|Xenbase genepage ID|Xenbase gene symbol|Xenbase gene name 24) XenbaseGeneMouseOrthologMapping.txt ile contains a mapping of XB-GENEPAGE IDs and annotation to mouse Entrez Gene IDs TSV XenbaseGeneMouseOrthologMapping.pl perl Mouse Entrez Gene ID|Xenbase genepage ID|Xenbase gene symbol|Xenbase gene name 25) XenbaseGeneZebrafishOrthologMapping.txt File contains a mapping of XB-GENEPAGE IDs and annotation to zebrafish Entrez Gene IDs TSV XenbaseGeneZebrafishOrthologMapping.pl perl Zebrafish Entrez Gene ID|Xenbase genepage ID|Xenbase gene symbol|Xenbase gene name 26) XenbaseGenepageToGeneIdMapping.txt File contains the mapping of XB-GENEPAGE IDs, the primary identifier for a genepage to XB-GENE IDs for individual tropicalis and laevis genes. TSV XenbaseGenepageToGeneIdMapping.pl perl XB-GENEPAGE ID|XB-GENE IDs for tropicalis and laevis The XB-GENE IDs are tab delimited. The gene symbol is tab del from corresponding XB-GENE ID 27) JgiToXenbaseGenePage_4.1.txt File contains the mapping JGI tropicalis models to Xenbase gene page IDs. TSV JgiToXenbaseGenePage_4.pl perl model name|Xenbase tropicalis gene ID|gene symbol|gene name 28) JgiToXenbaseGenePage_7.1.txt File contains the mapping JGI tropicalis models to Xenbase gene page IDs. TSV JgiToXenbaseGenePage_7.pl perl model name|Xenbase tropicalis gene ID|gene symbol|gene name 29) GenePageToJgiTropicalisScaffoldMapping_7.1.txt File contains a mapping of all Xenbase gene pages to their parent 7.1 JGI models TSV GenePageToJgiTropicalisScaffoldMapping_7.pl perl Xenbase gene ID|gene symbol|JGI Model Name|JGI Scaffold Name|JGI Scaffold Start Position|JGI Scaffold End Position|JGI Scaffold Strand 30) GeneExpPerTissue_laevis.txt File contains a listing of expression patterns for xenopus laevis. TSV GeneExpPerTissue_laevis.pl perl col_speciesGeneId|col_speciesGeneSymbol|col_wildType|col_anatomyXaoId col_anatomyItem|col_startStageXaoId col_startStage|col_endStageXaoId col_endStage|col_experiment|XB-IMG-col_imageId|XB-EXP-col_experimentId|col_source|XB-ART-col_xenPaperId|col_annotStatus Note that the fields 'anatomical tissue', 'start stage' and 'end stage' are of the format 'XAO_ID XAO_Name' 31) GeneExpPerTissue_tropicalis.txt File contains a listing of expression patterns for xenopus laevis. TSV GeneExpPerTissue_tropicalis.pl perl col_speciesGeneId|col_speciesGeneSymbol|col_wildType|col_anatomyXaoId col_anatomyItem|col_startStageXaoId col_startStage|col_endStageXaoId col_endStage|col_experiment|XB-IMG-col_imageId|XB-EXP-col_experimentId|col_source|XB-ART-col_xenPaperId|col_annotStatus Note that the fields 'anatomical tissue', 'start stage' and 'end stage' are of the format 'XAO_ID XAO_Name' 32) GenePageAffymetrix_laevis2.0.txt File contains a mapping of Affymetrix 2.0 expression IDs to Xenbase gene pages TSV GenePageAffymetrix_laevis2.pl perl Xenbase gene ID|gene symbol|Affymetrix IDs Affymetrix IDs for a given gene page are comma-separated 33) GenePageToJgiTropicalisScaffoldMapping_8.0.txt File contains a mapping of all Xenbase gene pages to their parent 8.0 JGI models TSV GenePageToJgiTropicalisScaffoldMapping_8.pl perl Xenbase gene ID|gene symbol|JGI Model Name|JGI Scaffold Name|JGI Scaffold Start Position|JGI Scaffold End Position|JGI Scaffold Strand 34) GenePageToJgiLaevisScaffoldMapping_6.0.txt File contains a mapping of all Xenbase gene pages to their parent 6.0 JGI models TSV GenePageToJgiLaevisScaffoldMapping_6.pl perl Xenbase gene ID|gene symbol|JGI Model Name|JGI Scaffold Name|JGI Scaffold Start Position|JGI Scaffold End Position|JGI Scaffold Strand 35) GenePageToJgiLaevisScaffoldMapping_7.1.txt File contains a mapping of all Xenbase gene pages to their parent 7.1 JGI models TSV GenePageToJgiLaevisScaffoldMapping_7.pl perl Xenbase gene ID|gene symbol|JGI Model Name|JGI Scaffold Name|JGI Scaffold Start Position|JGI Scaffold End Position|JGI Scaffold Strand 36) GenePageToJgiLaevisScaffoldMapping_8.0.txt File contains a mapping of all Xenbase gene pages to their parent 8.0 JGI models TSV GenePageToJgiLaevisScaffoldMapping_8.pl perl Xenbase gene ID|gene symbol|JGI Model Name|JGI Scaffold Name|JGI Scaffold Start Position|JGI Scaffold End Position|JGI Scaffold Strand 37) InSituHybridization_laevis.txt File contains a mapping of all Xenbase gene pages with stage, image and curation method TSV InSituHybridization_laevis.pl perl Xenbase gene ID|gene symbol|ModelID|StartStage|EndStage|XenbaseImage|CurationMethod 38) InSituHybridization_tropicalis.txt File contains a mapping of all Xenbase gene pages with stage, image and curation method TSV InSituHybridization_tropicalis.pl perl Xenbase gene ID|gene symbol|ModelID|StartStage|EndStage|XenbaseImage|CurationMethod 39) JgiToXenbaseGenePage_8.0.txt File contains the mapping JGI tropicalis models to Xenbase gene page IDs. TSV JgiToXenbaseGenePage_8.pl perl model name|Xenbase tropicalis gene ID|gene symbol|gene name 40) LiteratureMatchedGenesByPaper.txt NA TSV LiteratureMatchedGenesByPaper.pl perl Article|pubMedID|genePageId_and_Symbol genePageId_and_Symbol listing comma separated 41) Trop4.1EnsemblToHumanEnsemblMapping.txt NA TSV Trop4.pl perl NA 42) TropicalisGenePage_NoModel.fasta File contains a listing of Xenbase gene pages created using an NCBI xenopus tropicalis Entrez Gene entry as a seed. These gene pages have no genomic gene model associated with them. These models will contain, where applicable, xenopus laevis gene data. fasta TropicalisGenePage_NoModel.pl perl Xenbase gene ID|gene symbol|tropicalis unigene ID|tropicalis Entrez Gene ID 43) XenbaseGeneNonEntrezOrthologMapping.txt File contains a listing of Xenbase gene pages with OMIM, ZFIN, MGI and GEISHA TSV XenbaseGeneNonEntrezOrthologMapping.pl perl Xenbase|OMIM|MGI|ZFIN|GEISHA 44) XenbaseOmimData.txt File contains a listing of Xenbase gene pages with OMIM gene, disease and laevis and trop identifiers TSV XenbaseOmimData.pl perl XB Umbrella Gene ID| Gene Symbol| Human Entrez ID| OMIM Gene ID| OMIM Disease IDs(;)| XB tropicalis ID| Entrez tropicalis ID| XB laevis-L ID| laevis-L Symbol| Entrez laevis-L ID| XB laevis-S ID| laevis-S Symbol| Entrez laevis-S ID 45) GeneKoTerms.txt File contains a list of XB-GENE IDs mapped to KEGG terms TSV GeneKoTerms.pl perl Xenbase gene ID|gene symbol|KEGG Ids The list of KEGG IDs is comma separated 46) GeneExternalRef.txt File contains a list of XB-GENE IDs with external entities TSV GeneExternalRef.pl perl Xenbase gene ID|gene symbol|gene name|NCBI taxon ID|Entrez ID|JGI IDs (delimited)|Uniprot IDs (delimited)|ENSEMBL IDs (delimited) The list of IDs is pipe delimited 47) XenbaseGeneUniprotMapping.txt File contains a list of XB-GENE IDs with external ref for UniprotKB TSV UniprotDump.pl perl Uniprot IDs|DR|Xenbase|Xenbase gene ID|gene symbol 48) GenePageIntProTerms.txt File contains a list of XB-GENE IDs mapped to InterPro terms TSV GenePageIntProTerms.pl perl XB GenePage|Xenbase gene ID|gene symbol|IPRO Ids The list of IPRO IDs is comma separated 50) exp_data_aged_clone_amended.csv File contains a list of XB-CLONE IDs age report since last mod. Monthly refresh and email on 27th. CSV exp_data_aged_clone_amended.pl perl AGED_FROM_CHANGE,ADD_AMEND_DATE,CLONE_ID,XB_CLONE,NAME,ORGANISM_ID,DESCRIPTION 51) XenbaseGenepageToCoCitedGeneIdMapping.txt File contains co-cited information on all the gene pages in Xenbase. TSV XenbaseGenepageToCoCitedGeneIdMapping.pl perl Xenbase gene ID|gene symbol|co_cited_idList|co_cited_symbolList pipe delimited xb-gene co_cited_idList;pipe delimited co_cited_symbolList 52) GeneFeat_AnatItem_MarkerImp.tab File contains anatomy item to gene page markers in Xenbase. TSV XAO_GeneFeatureMarkerImpExp.pl perl NAME|ANATOMY_ITEM_ID|ANAT_REF|LIST_FEATURE_RELATED|LIST_SYMBOL_NAMES comma delimited xb-gene LIST_FEATURE_RELATED;comma delimited LIST_SYMBOL_NAMES 53) GenePageToJgiTropicalisScaffoldMapping_9.1.txt File contains a mapping of all Xenbase gene pages to their parent 9.1 JGI models TSV GenePageToJgiTropicalisScaffoldMapping_9_1.pl perl Xenbase gene ID|gene symbol|JGI Model Name|JGI Scaffold Name|JGI Scaffold Start Position|JGI Scaffold End Position|JGI Scaffold Strand 54) JgiToXenbaseGenePage_9.1.txt File contains the mapping JGI tropicalis models to Xenbase gene page IDs. TSV JgiToXenbaseGenePage_9_1.pl perl model name|Xenbase tropicalis gene ID|gene symbol|gene name 55) geo_metadat.txt File contains GSE metadata and jbrowse job run data TSV GEOMetaDump.pl perl GSE_ID|CONTACTPERSON|SERIESTITLE|SUMMARY|CONTRIBUTORS|EXPDESIGN|PUBMEDID|PAPER_ID|SRA_STUDY_NUM|TRACKNAME|ASSAY|STAGE|TISSUE|PUBLICATION|GSM|CAT_HIERARCHY|STRAIN|SPECIES_VERSION|EXT_SPECIES_VERSION|STATUS_LIST|GSE_ROOT_FOLDER|GSE_SPECIES_VER_ROOT_FOLDER|GSE_BW_ROOT_FOLDER|GSE_TPM_ROOT_FOLDER|GSE_DE_ROOT_FOLDER|GSE_PEAK_ROOT_FOLDER|GSE_README_FILE 56) geo_srr_metadata.txt File contains the GEO SRR metadata. TSV GEOMetaDump.pl perl GSE_ID|RECNUM|CONTACTPERSON|SERIESTITLE|SUMMARY|CONTRIBUTORS|EXPDESIGN|PUBMEDID|PAPER_ID|SRA_STUDY_NUM|SRR|URL_SRR_SOURCE|GSM|SRA|SRX|ASSAYTYPE|LIBRARYLAYOUT|SRP|BIOPROJECT 57) GeneGenomeHumanOrtho_xl9_1.txt File contains a list of XB-GENE IDs with Human Ortholog and HGNC dbxrefs TSV GeneGenomeHumanOrtho.pl perl XENBASE_GENE_ID|SYMBOL|XENBASE_GENEPAGE_ID|XENBASE_TRANSCRIPT_ID|ENTREZ_GENE_ID|MODEL_NAME|NCBI_GENE_ID|DB_ID|GENOME_ASSEMBLY|ENSEMBL|HGNC_ID|ORTHOLOG_HUMAN_SYMBOL|ORTHOLOG_HUMAN_ENTREZ The list of IDs is pipe separated 58) GeneGenomeHumanOrtho_xl9_2.txt File contains a list of XB-GENE IDs with Human Ortholog and HGNC dbxrefs TSV GeneGenomeHumanOrtho.pl perl XENBASE_GENE_ID|SYMBOL|XENBASE_GENEPAGE_ID|XENBASE_TRANSCRIPT_ID|ENTREZ_GENE_ID|MODEL_NAME|NCBI_GENE_ID|DB_ID|GENOME_ASSEMBLY|ENSEMBL|HGNC_ID|ORTHOLOG_HUMAN_SYMBOL|ORTHOLOG_HUMAN_ENTREZ The list of IDs is pipe separated 59) GeneGenomeHumanOrtho_xt9_1.txt File contains a list of XB-GENE IDs with Human Ortholog and HGNC dbxrefs TSV GeneGenomeHumanOrtho.pl perl XENBASE_GENE_ID|SYMBOL|XENBASE_GENEPAGE_ID|XENBASE_TRANSCRIPT_ID|ENTREZ_GENE_ID|MODEL_NAME|NCBI_GENE_ID|DB_ID|GENOME_ASSEMBLY|ENSEMBL|HGNC_ID|ORTHOLOG_HUMAN_SYMBOL|ORTHOLOG_HUMAN_ENTREZ The list of IDs is pipe separated 60) GeneGenomeHumanOrtho_pivot_xl.txt File contains a list of XLaevis XB-GENE IDs with Human Ortholog and HGNC dbxrefs TSV GeneGenomeHumanOrtho.pl perl XENBASE_GENE_ID|SYMBOL|ENTREZ_GENE_ID|JGI_XL_GENOME_7_1_GENE|JGI_XL_GENOME_9_1_GENE|XB_XL_GENOME_9_2_GENE|ENSEMBL|HGNC_ID|ORTHOLOG_HUMAN_SYMBOL|ORTHOLOG_HUMAN_ENTREZ The list of IDs is pipe separated 61) GeneGenomeHumanOrtho_pivot_xt.txt File contains a list of XTrop XB-GENE IDs with Human Ortholog and HGNC dbxrefs TSV GeneGenomeHumanOrtho.pl perl XENBASE_GENE_ID|SYMBOL|ENTREZ_GENE_ID|JGI_XT_GENOME_7_1_GENE|JGI_XT_GENOME_8_0_GENE|XB_XT_GENOME_9_1_GENE|ENSEMBL|HGNC_ID|ORTHOLOG_HUMAN_SYMBOL|ORTHOLOG_HUMAN_ENTREZ The list of IDs is pipe separated 62) cur_exp_geo_pipe_run.txt File contains a list of GEO GSE for GEO pipeline processing TSV GEORunfileGen.pl perl LABEL_OLD|LABEL|BIGWIG|TRACKNAME|ASSAY|STAGE|TISSUE|PUBLICATION|PAPER|LAB|GSE_ID|GSM|CAT_HIERARCHY|BIN_ID|CTRL_BIN_ID|STRAIN|IS_FOR_BIGWIG|SPECIES_VERSION|EXT_SPECIES_VERSION|SPECIES_VERSION_DBXREF|STATUS_LIST|STATUS_IDS|GSE_ROOT_FOLDER|GSE_SPECIES_VER_ROOT_FOLDER|GSE_BW_ROOT_FOLDER|GSE_TPM_ROOT_FOLDER|GSE_DE_ROOT_FOLDER|GSE_PEAK_ROOT_FOLDER|GSE_README_FILE The list of IDs is pipe separated 63) jbrunfile_all.txt File contains a list of GEO GSE with bigwig and paths TSV GEORunfileGen.pl perl XENBASE_GENE_ID|SYMBOL|XENBASE_GENEPAGE_ID|XENBASE_TRANSCRIPT_ID|ENTREZ_GENE_ID|MODEL_NAME|NCBI_GENE_ID|DB_ID|GENOME_ASSEMBLY|ENSEMBL|HGNC_ID|ORTHOLOG_HUMAN_SYMBOL|ORTHOLOG_HUMAN_ENTREZ The list of IDs is pipe separated 64) GeneMondoRef.txt File contains a list of MONDO and HPID TSV GeneMondoRef.pl perl XENBASE_GENE_ID|SYMBOL|XENBASE_GENEPAGE_ID|XENBASE_TRANSCRIPT_ID|ENTREZ_GENE_ID|ENSEMBL|HGNC_ID|ORTHOLOG_HUMAN_SYMBOL|ORTHOLOG_HUMAN_ENTREZ|HUMAN_GENE_ID|NCBI_TAXON|MONDO|HPID|EFOID The list of IDs is pipe separated 65) GenePhenoRef.txt File contains a list of Gene and Pheno TSV GenePhenoRef.pl perl XENBASE_GENE_ID|SYMBOL|XENBASE_GENEPAGE_ID|ENTREZ_GENE_ID|PRIMARYGENETICENTITY|NCBI_TAXON|XENBASE_PHENO_ID|XPO_DBXREF_ID|PHENO_TERM_ID|PHENO_STM|TERM_ORDER|PUBMED|CROSSREF_PUB|TARGET_GENE|EVIDENCE_LABEL|QUALIFIER|ANNOTATION_TYPE|REF_TYPE n_a 66) XenbaseARTID_to_PMID_to_PMCID.txt File contains a mapping of the XB-ART-IDs (internal PAER_ID) to PUBMEDID and PMCID XenbaseARTID_to_PMID_to_PMCID.pl perl XB-ART-ID PUBMEDID PMCID The of IDs are tab separated