xenbase experimental data.owl
type: Ontology
auto-generated-by: OBO-Edit 2.3.2
date: 08:09:20240 09:01
default-namespace: xenbase_experimental_data
has_obo_format_version: 1.2
saved-by: Malcolm Fisher
version info: 1.4

definition
type: AnnotationProperty

subset_property
type: AnnotationProperty

synonym_type_property
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_narrow_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

has_synonym_type
type: AnnotationProperty

in_subset
type: AnnotationProperty

Abbreviation
type: AnnotationProperty
sub property of: synonym_type_property

Antibody methods
type: AnnotationProperty
comment: Antibody methods
sub property of: subset_property

Article content types
type: AnnotationProperty
comment: Article content types
sub property of: subset_property

ChIP type
type: AnnotationProperty
comment: ChIP_type
sub property of: subset_property

Copyright access
type: AnnotationProperty
comment: Copyright access types
sub property of: subset_property

Corpus
type: AnnotationProperty
comment: Corpus Assesment
sub property of: subset_property

GEO assay types
type: AnnotationProperty
comment: GEO_assay_types
sub property of: subset_property

GEO manipulation types
type: AnnotationProperty
comment: GEO_manipulation_types
sub property of: subset_property

PHENO assay types
type: AnnotationProperty
comment: PHENO_assay_types
sub property of: subset_property

Plural
type: AnnotationProperty
sub property of: synonym_type_property

Temperature degC
type: AnnotationProperty
comment: Temperature in degrees Celsius
sub property of: subset_property

XED Orthology prediction finding
type: AnnotationProperty
comment: XED Orthology prediction finding
sub property of: subset_property

XED Orthology prediction method
type: AnnotationProperty
comment: XED Orthology prediction method
sub property of: subset_property

XED copyright pmc subset
type: AnnotationProperty
comment: XED copyright pmc subset
sub property of: subset_property

assay
type: AnnotationProperty
comment: Experimental Assay
sub property of: subset_property

manipulation
type: AnnotationProperty
comment: Experimental Manipulation
sub property of: subset_property

morpholino type
type: AnnotationProperty
comment: morpholino types
sub property of: subset_property

Curatable Data
type: Class
creation date: 2010-12-19T09:23:26Z
database_cross_reference: ECO:0000000
has_obo_namespace: xenbase_experimental_data
id: XBED:0000000
in_subset: Article content types

Gene Expression Assay
type: Class
subclass of: Curatable Data
created by: Jeff
creation date: 2010-12-19T09:24:42Z
database_cross_reference: ECO:0000008
has_obo_namespace: xenbase_experimental_data
id: XBED:0000001
in_subset: Article content types

Phenotype
type: Class
subclass of: Curatable Data
created by: Jeff
creation date: 2010-12-19T09:25:55Z
database_cross_reference: ECO:0000059
has_obo_namespace: xenbase_experimental_data
id: XBED:0000002
in_subset: Article content types
in_subset: assay

in situ hybridization
type: Class
subclass of: Gene Expression Assay
created by: Jeff
creation date: 2010-12-19T09:26:48Z
database_cross_reference: ECO:0000289
database_cross_reference: MMO:0000658
has_exact_synonym: ISH
has_exact_synonym: WMISH
has_exact_synonym: whole mount in situ hybridization
has_obo_namespace: xenbase_experimental_data
id: XBED:0000003
in_subset: Article content types
in_subset: PHENO assay types
in_subset: assay

Axiom
annotated source: in situ hybridization
annotated property: has_exact_synonym
annotated target: ISH
has_synonym_type: ABBREVIATION

immunohistochemistry
type: Class
subclass of: Gene Expression Assay
subclass of: Protein Localization
subclass of: histochemistry
created by: Jeff
creation date: 2010-12-19T09:27:20Z
database_cross_reference: ECO:0001189
database_cross_reference: MMO:0000498
has_exact_synonym: IHC
has_obo_namespace: xenbase_experimental_data
has_related_synonym: IF
has_related_synonym: immunofluorescence
id: XBED:0000004
in_subset: Antibody methods
in_subset: Article content types
in_subset: PHENO assay types
in_subset: assay

Axiom
annotated source: immunohistochemistry
annotated property: has_exact_synonym
annotated target: IHC
has_synonym_type: ABBREVIATION

microarray
type: Class
subclass of: Gene Expression Assay
created by: Jeff
creation date: 2010-12-19T09:29:32Z
database_cross_reference: ECO:0000058
has_obo_namespace: xenbase_experimental_data
has_related_synonym: Affymetrix
id: XBED:0000005
in_subset: Article content types
in_subset: GEO assay types
in_subset: assay

Experimental Manipulation
type: Class
subclass of: Curatable Data
created by: lab
creation date: 2011-10-14T01:52:50Z
database_cross_reference: ECO:0000059
has_exact_synonym: Experimental Treatment
has_exact_synonym: Treatment
has_obo_namespace: xenbase_experimental_data
id: XBED:0000006

gain of function
type: Class
subclass of: Phenotype
created by: Jeff
creation date: 2010-12-19T09:31:05Z
database_cross_reference: ECO:0000042
has_exact_synonym: GOF
has_obo_namespace: xenbase_experimental_data
has_related_synonym: overexpression
id: XBED:0000007
in_subset: Article content types

loss of function
type: Class
subclass of: Phenotype
created by: Jeff
creation date: 2010-12-19T09:31:57Z
database_cross_reference: ECO:0000016
has_exact_synonym: LOF
has_obo_namespace: xenbase_experimental_data
has_related_synonym: knockdown
has_related_synonym: knockout
id: XBED:0000008
in_subset: Article content types

morpholino oligo
type: Class
subclass of: Reagent
definition: An oligonucleotide with morpholine rings replacing backbone elements of standard DNA/RNA, binds stably to complementary RNA sequences.
created by: Jeff
creation date: 2010-12-19T09:34:47Z
database_cross_reference: ECO:0000292
has_exact_synonym: MO
has_obo_namespace: xenbase_experimental_data
has_related_synonym: morphant
id: XBED:0000009
in_subset: Article content types

mRNA injection
type: Class
subclass of: Genetic material injection
created by: Jeff
creation date: 2010-12-19T09:36:08Z
database_cross_reference: ECO:0000017
has_obo_namespace: xenbase_experimental_data
id: XBED:0000010
in_subset: Article content types
in_subset: GEO manipulation types
in_subset: manipulation

western blot
type: Class
subclass of: Gene Expression Assay
created by: Jeff
creation date: 2010-12-21T05:07:03Z
database_cross_reference: ECO:0000279
database_cross_reference: MMO:0000669
has_obo_namespace: xenbase_experimental_data
id: XBED:0000011
in_subset: Antibody methods
in_subset: Article content types
in_subset: PHENO assay types
in_subset: assay

RT-PCR
type: Class
subclass of: Gene Expression Assay
created by: Jeff
creation date: 2010-12-21T05:08:29Z
database_cross_reference: ECO:0001808
database_cross_reference: MMO:0000461
has_exact_synonym: reverse transcriptase PCR
has_obo_namespace: xenbase_experimental_data
id: XBED:0000012
in_subset: Article content types
in_subset: PHENO assay types
in_subset: assay

northern blot
type: Class
subclass of: Gene Expression Assay
created by: Jeff
creation date: 2010-12-21T05:09:23Z
database_cross_reference: ECO:0005653
has_obo_namespace: xenbase_experimental_data
id: XBED:0000013
in_subset: Article content types
in_subset: PHENO assay types
in_subset: assay

RNA interference
type: Class
subclass of: loss of function
created by: Jeff
creation date: 2010-12-21T05:12:35Z
database_cross_reference: ECO:0000019
has_exact_synonym: RNAi
has_exact_synonym: cosuppression
has_exact_synonym: posttranscriptional silencing
has_exact_synonym: quelling
has_obo_namespace: xenbase_experimental_data
id: XBED:0000014
in_subset: Article content types
in_subset: manipulation

microRNA
type: Class
subclass of: Genetic material injection
created by: Jeff
creation date: 2010-12-21T05:13:37Z
database_cross_reference: ECO:0000019
has_obo_namespace: xenbase_experimental_data
id: XBED:0000015
in_subset: Article content types
in_subset: GEO manipulation types
in_subset: manipulation

siRNA
type: Class
subclass of: RNA interference
subclass of: microinjection
created by: Jeff
creation date: 2010-12-21T05:14:10Z
database_cross_reference: ECO:0000019
has_obo_namespace: xenbase_experimental_data
id: XBED:0000016
in_subset: Article content types
in_subset: GEO manipulation types
in_subset: manipulation

loss of function mutation
type: Class
subclass of: loss of function
created by: Jeff
creation date: 2010-12-21T05:14:45Z
database_cross_reference: ECO:0000016
has_exact_synonym: LOF mutation
has_obo_namespace: xenbase_experimental_data
id: XBED:0000017
in_subset: Article content types

Reagent
type: Class
subclass of: Curatable Data
created by: lab
creation date: 2011-10-14T01:53:13Z
database_cross_reference: ECO:0000241
has_obo_namespace: xenbase_experimental_data
id: XBED:0000018

electroporation/transfection
type: Class
subclass of: Experimental Manipulation
created by: Jeff
creation date: 2010-12-21T05:16:13Z
has_exact_synonym: electroporation
has_exact_synonym: lipofection
has_exact_synonym: transfection
has_obo_namespace: xenbase_experimental_data
id: XBED:0000019
in_subset: Article content types
in_subset: GEO manipulation types
in_subset: manipulation

environmental treatment
type: Class
subclass of: Experimental Manipulation
created by: lab
creation date: 2011-10-14T02:20:06Z
database_cross_reference: ECO:0000241
has_obo_namespace: xenbase_experimental_data
id: XBED:0000020
in_subset: GEO manipulation types
in_subset: manipulation

microdissection
type: Class
subclass of: Experimental Manipulation
created by: lab
creation date: 2011-10-14T02:20:27Z
database_cross_reference: ECO:0000240
has_exact_synonym: microsurgery
has_exact_synonym: surgery
has_obo_namespace: xenbase_experimental_data
id: XBED:0000021
in_subset: manipulation

microinjection
type: Class
subclass of: Experimental Manipulation
created by: lab
creation date: 2011-10-14T02:20:43Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000022

cell culture manipulation
type: Class
subclass of: Experimental Manipulation
created by: lab
creation date: 2011-10-14T02:21:02Z
database_cross_reference: ECO:0000182
has_exact_synonym: tissue culture cells (from Xenopus)
has_obo_namespace: xenbase_experimental_data
id: XBED:0000023

transgenesis
type: Class
subclass of: Experimental Manipulation
created by: lab
creation date: 2011-10-14T02:21:49Z
database_cross_reference: ECO:0001131
has_exact_synonym: transgenics
has_obo_namespace: xenbase_experimental_data
has_related_synonym: transgenic
has_related_synonym: transgenic line
id: XBED:0000024
in_subset: GEO manipulation types
in_subset: manipulation

chemical
type: Class
subclass of: environmental treatment
created by: lab
creation date: 2011-10-14T02:22:23Z
database_cross_reference: ECO:0000241
has_exact_synonym: chemical treatment
has_obo_namespace: xenbase_experimental_data
has_related_synonym: chemical mutagenesis
id: XBED:0000025
in_subset: GEO manipulation types
in_subset: manipulation

heat shock
type: Class
subclass of: environmental treatment
created by: lab
creation date: 2011-10-14T02:22:41Z
database_cross_reference: ECO:0000241
has_obo_namespace: xenbase_experimental_data
id: XBED:0000026
in_subset: GEO manipulation types
in_subset: manipulation

peptide/protein
type: Class
subclass of: environmental treatment
created by: lab
creation date: 2011-10-14T02:22:52Z
database_cross_reference: ECO:0000241
has_exact_synonym: growth factor treatment
has_obo_namespace: xenbase_experimental_data
id: XBED:0000027
in_subset: GEO manipulation types
in_subset: manipulation

UV light
type: Class
subclass of: radiation
created by: lab
creation date: 2011-10-14T02:23:10Z
database_cross_reference: ECO:0000241
has_exact_synonym: UV irradiation
has_exact_synonym: ultraviolet light
has_exact_synonym: ultraviolet radiation
has_obo_namespace: xenbase_experimental_data
id: XBED:0000028
in_subset: GEO manipulation types
in_subset: manipulation

electrophysiology
type: Class
subclass of: chemical
created by: lab
creation date: 2011-10-14T02:55:04Z
database_cross_reference: ECO:0006006
has_obo_namespace: xenbase_experimental_data
id: XBED:0000029
in_subset: PHENO assay types
in_subset: assay

toxicology
type: Class
subclass of: chemical
created by: lab
creation date: 2011-10-14T02:55:27Z
database_cross_reference: ECO:0000241
has_obo_namespace: xenbase_experimental_data
id: XBED:0000030

tissue ablation
type: Class
subclass of: microdissection
created by: lab
creation date: 2011-10-14T02:55:58Z
database_cross_reference: ECO:0000242
has_exact_synonym: partial tissue removal
has_obo_namespace: xenbase_experimental_data
has_related_synonym: cell ablation
has_related_synonym: tissue removal
id: XBED:0000031
in_subset: GEO manipulation types
in_subset: manipulation

explant
type: Class
subclass of: microdissection
created by: lab
creation date: 2011-10-14T02:56:15Z
database_cross_reference: ECO:0000242
has_exact_synonym: explant culture
has_exact_synonym: explantation
has_obo_namespace: xenbase_experimental_data
id: XBED:0000032
in_subset: GEO manipulation types
in_subset: manipulation

transplant
type: Class
subclass of: microdissection
created by: lab
creation date: 2011-10-14T02:56:32Z
database_cross_reference: ECO:0000243
has_exact_synonym: transplantation
has_obo_namespace: xenbase_experimental_data
id: XBED:0000033
in_subset: GEO manipulation types
in_subset: manipulation

DNA injection
type: Class
subclass of: Genetic material injection
created by: lab
creation date: 2011-10-14T02:57:13Z
database_cross_reference: ECO:0000017
has_obo_namespace: xenbase_experimental_data
id: XBED:0000034
in_subset: GEO manipulation types
in_subset: manipulation

lineage tracer
type: Class
subclass of: microinjection
created by: lab
creation date: 2011-10-14T02:57:27Z
has_obo_namespace: xenbase_experimental_data
has_related_synonym: fate mapping
id: XBED:0000035
in_subset: GEO manipulation types
in_subset: manipulation

morpholino injection
type: Class
subclass of: antisense oligonucleotide injection
created by: lab
creation date: 2011-10-14T02:57:43Z
database_cross_reference: ECO:0000292
has_obo_namespace: xenbase_experimental_data
id: XBED:0000036
in_subset: GEO manipulation types
in_subset: manipulation

protein injection
type: Class
subclass of: microinjection
created by: lab
creation date: 2011-10-14T02:58:02Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000037
in_subset: GEO manipulation types
in_subset: manipulation

stable line
type: Class
subclass of: transgenesis
created by: lab
creation date: 2011-10-14T02:58:46Z
database_cross_reference: ECO:0001131
has_obo_namespace: xenbase_experimental_data
has_related_synonym: stable transgenic
has_related_synonym: stable transgenic line
id: XBED:0000038

transient
type: Class
subclass of: transgenesis
created by: lab
creation date: 2011-10-14T02:58:57Z
database_cross_reference: ECO:0001131
has_exact_synonym: transient transgenic
has_obo_namespace: xenbase_experimental_data
has_related_synonym: transient transgenesis
id: XBED:0000039

real time PCR
type: Class
subclass of: Gene Expression Assay
created by: lab
creation date: 2011-10-14T02:59:15Z
database_cross_reference: ECO:0000108
has_exact_synonym: real time RT-PCR
has_obo_namespace: xenbase_experimental_data
id: XBED:0000040
in_subset: assay

antibody
type: Class
subclass of: Reagent
created by: lab
creation date: 2011-10-14T02:59:44Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000041

clone
type: Class
subclass of: Reagent
created by: lab
creation date: 2011-10-14T02:59:55Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000042

transgene
type: Class
subclass of: Reagent
created by: lab
creation date: 2011-10-14T03:00:16Z
database_cross_reference: ECO:0001131
has_obo_namespace: xenbase_experimental_data
has_related_synonym: transgenic construct
id: XBED:0000043

ELISA
type: Class
subclass of: Other Detection Assay
created by: lab
creation date: 2011-10-17T09:08:22Z
database_cross_reference: ECO:0005581
has_exact_synonym: enzyme linked immunosorbent assay
has_obo_namespace: xenbase_experimental_data
id: XBED:0000044
in_subset: Antibody methods
in_subset: PHENO assay types
in_subset: assay

flow cytometry
type: Class
subclass of: Other Detection Assay
created by: lab
creation date: 2011-10-17T09:08:37Z
database_cross_reference: ECO:0005580
has_exact_synonym: FC
has_narrow_synonym: FACS
has_obo_namespace: xenbase_experimental_data
id: XBED:0000045
in_subset: Antibody methods
in_subset: PHENO assay types
in_subset: assay

Other Detection Assay
type: Class
subclass of: Curatable Data
created by: lab
creation date: 2011-10-17T09:21:01Z
database_cross_reference: ECO:0000314
has_obo_namespace: xenbase_experimental_data
id: XBED:0000046
in_subset: Antibody methods
in_subset: PHENO assay types
in_subset: assay

ChIP
type: Class
subclass of: immunoprecipitation
created by: lab
creation date: 2011-10-17T09:21:36Z
database_cross_reference: ECO:0007706
has_exact_synonym: chromatin IP
has_obo_namespace: xenbase_experimental_data
has_related_synonym: chromatin immunoprecipitation
id: XBED:0000047
in_subset: Antibody methods
in_subset: assay

EMSA
type: Class
subclass of: Other Detection Assay
created by: lab
creation date: 2011-10-17T09:23:26Z
database_cross_reference: ECO:0001807
has_obo_namespace: xenbase_experimental_data
has_related_synonym: electromobility shift assay
id: XBED:0000048
in_subset: Antibody methods
in_subset: PHENO assay types
in_subset: assay

No Curatable Data
type: Class
created by: lab
creation date: 2011-10-17T10:05:49Z
has_exact_synonym: NCD
has_obo_namespace: xenbase_experimental_data
id: XBED:0000049

gain of function mutation
type: Class
subclass of: gain of function
created by: lab
creation date: 2011-10-17T10:11:26Z
database_cross_reference: ECO:0000042
has_exact_synonym: GOF mutation
has_obo_namespace: xenbase_experimental_data
id: XBED:0000050

overexpression
type: Class
subclass of: gain of function
created by: lab
creation date: 2011-10-17T10:11:46Z
database_cross_reference: ECO:0000120
has_obo_namespace: xenbase_experimental_data
id: XBED:0000051
in_subset: manipulation

tissue regeneration
type: Class
subclass of: Phenotype
created by: lab
creation date: 2011-10-17T10:12:13Z
database_cross_reference: ECO:0000242
has_exact_synonym: regenerating tissue
has_obo_namespace: xenbase_experimental_data
has_related_synonym: limb regeneration
id: XBED:0000052

southern blot
type: Class
subclass of: Other Detection Assay
created by: lab
creation date: 2011-10-18T12:34:23Z
database_cross_reference: ECO:0000078
has_obo_namespace: xenbase_experimental_data
id: XBED:0000053
in_subset: assay

immunoprecipitation
type: Class
subclass of: Other Detection Assay
created by: lab
creation date: 2011-10-27T02:20:28Z
database_cross_reference: ECO:0005644
has_exact_synonym: IP
has_obo_namespace: xenbase_experimental_data
id: XBED:0000054
in_subset: assay

Protein Localization
type: Class
subclass of: Curatable Data
created by: lab
creation date: 2011-10-27T02:23:12Z
database_cross_reference: ECO:0000045
has_obo_namespace: xenbase_experimental_data
id: XBED:0000055
in_subset: assay

cell extract manipulation
type: Class
subclass of: Experimental Manipulation
created by: lab
creation date: 2011-10-27T02:27:52Z
database_cross_reference: ECO:0000183
has_exact_synonym: cell extract
has_obo_namespace: xenbase_experimental_data
id: XBED:0000056
in_subset: assay

fluorescent protein tag
type: Class
subclass of: Protein Localization
created by: lab
creation date: 2011-10-28T09:14:03Z
database_cross_reference: ECO:0000045
has_obo_namespace: xenbase_experimental_data
id: XBED:0000057
in_subset: assay

amputation/regeneration
type: Class
subclass of: tissue ablation
created by: lab
creation date: 2012-04-30T01:03:27Z
database_cross_reference: ECO:0000242
has_exact_synonym: amputation
has_exact_synonym: regeneration
has_obo_namespace: xenbase_experimental_data
id: XBED:0000058
in_subset: GEO manipulation types
in_subset: manipulation

RNA-Seq
type: Class
subclass of: Gene Expression Assay
created by: lab
creation date: 2012-10-24T01:46:56Z
database_cross_reference: ECO:0000295
has_obo_namespace: xenbase_experimental_data
id: XBED:0000059
in_subset: GEO assay types
in_subset: PHENO assay types
in_subset: assay

ChIP-Seq
type: Class
subclass of: ChIP
created by: lab
creation date: 2012-10-24T01:47:21Z
database_cross_reference: ECO:0000229
has_exact_synonym: Chromatin immunoprecipitation sequencing
has_obo_namespace: xenbase_experimental_data
id: XBED:0000060
in_subset: Antibody methods
in_subset: GEO assay types
in_subset: PHENO assay types
in_subset: assay

cell fractionation
type: Class
subclass of: Protein Localization
created by: lab
creation date: 2012-10-24T01:48:29Z
database_cross_reference: ECO:0000004
has_obo_namespace: xenbase_experimental_data
id: XBED:0000061
in_subset: assay

cell death detection assay
type: Class
subclass of: Other Detection Assay
created by: lab
creation date: 2012-10-24T02:06:06Z
database_cross_reference: ECO:0001264
has_obo_namespace: xenbase_experimental_data
has_related_synonym: TUNEL assay
id: XBED:0000062
in_subset: PHENO assay types
in_subset: assay

cell proliferation assay
type: Class
subclass of: Other Detection Assay
created by: lab
creation date: 2012-10-24T02:21:25Z
database_cross_reference: ECO:0001807
has_obo_namespace: xenbase_experimental_data
has_related_synonym: BrDU incorporation
has_related_synonym: thymidine uptake
has_related_synonym: tritiated thymidine assay
id: XBED:0000063
in_subset: PHENO assay types
in_subset: assay

cell viability assay
type: Class
subclass of: Other Detection Assay
created by: lab
creation date: 2012-10-24T03:00:05Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000064

morphology
type: Class
subclass of: Other Detection Assay
created by: lab
creation date: 2012-10-25T10:24:16Z
database_cross_reference: ECO:0007634
has_obo_namespace: xenbase_experimental_data
has_related_synonym: microscopy
id: XBED:0000065
in_subset: PHENO assay types
in_subset: assay

whole-mount microscopy
type: Class
subclass of: morphology
created by: lab
creation date: 2012-10-25T10:24:38Z
database_cross_reference: ECO:0001232
has_obo_namespace: xenbase_experimental_data
has_related_synonym: light microscopy
id: XBED:0000066
in_subset: PHENO assay types
in_subset: assay

scanning electron microscopy
type: Class
subclass of: morphology
created by: lab
creation date: 2012-10-25T10:25:08Z
database_cross_reference: ECO:0001232
has_obo_namespace: xenbase_experimental_data
has_related_synonym: SEM
id: XBED:0000067
in_subset: PHENO assay types
in_subset: assay

transmission electron microscopy
type: Class
subclass of: morphology
created by: lab
creation date: 2012-10-25T10:25:40Z
database_cross_reference: ECO:0001232
has_obo_namespace: xenbase_experimental_data
has_related_synonym: TEM
id: XBED:0000068
in_subset: PHENO assay types
in_subset: assay

histology
type: Class
subclass of: morphology
created by: lab
creation date: 2012-10-25T10:50:32Z
database_cross_reference: ECO:0001187
has_obo_namespace: xenbase_experimental_data
id: XBED:0000069
in_subset: PHENO assay types
in_subset: assay

stained tissue microscopy
type: Class
subclass of: morphology
created by: lab
creation date: 2012-10-25T10:53:37Z
database_cross_reference: ECO:0001232
has_obo_namespace: xenbase_experimental_data
id: XBED:0000070
in_subset: PHENO assay types
in_subset: assay

3D imaging
type: Class
subclass of: morphology
created by: lab
creation date: 2012-10-26T11:53:56Z
database_cross_reference: ECO:0001232
has_obo_namespace: xenbase_experimental_data
has_related_synonym: 3 dimensional reconstruction
has_related_synonym: three-dimensional imaging
id: XBED:0000071
in_subset: PHENO assay types
in_subset: assay

MBD-Seq
type: Class
subclass of: Other Detection Assay
created by: Joshua Fortriede
creation date: 2017-08-31T07:09:56Z
database_cross_reference: EFO:0003750
has_exact_synonym: methyl binding domain sequencing
has_obo_namespace: xenbase_experimental_data
id: XBED:0000072
in_subset: GEO assay types
in_subset: assay

Bisulfite-Seq
type: Class
subclass of: Other Detection Assay
created by: Joshua Fortriede
creation date: 2017-08-31T07:09:56Z
database_cross_reference: EFO:0003753
has_obo_namespace: xenbase_experimental_data
id: XBED:0000073
in_subset: GEO assay types
in_subset: assay

MNase-Seq
type: Class
subclass of: Other Detection Assay
created by: Joshua Fortriede
creation date: 2017-08-31T07:09:56Z
database_cross_reference: ECO:0000219
database_cross_reference: EFO:0003751
has_exact_synonym: Micrococcal nuclease sequencing
has_obo_namespace: xenbase_experimental_data
id: XBED:0000074
in_subset: GEO assay types
in_subset: assay

ncRNA-Seq
type: Class
subclass of: RNA-Seq
definition: Non-coding RNA sequencing.
created by: Joshua Fortriede
creation date: 2017-08-31T07:09:56Z
database_cross_reference: ECO:0000219
database_cross_reference: EFO:0003737
has_obo_namespace: xenbase_experimental_data
has_related_synonym: RNA-Seq of non coding RNA
id: XBED:0000075
in_subset: GEO assay types
in_subset: assay

RIP-Seq
type: Class
subclass of: immunoprecipitation
definition: RNA immunoprecipitation experiment assayed by sequencing.
created by: Joshua Fortriede
creation date: 2017-08-31T07:09:56Z
database_cross_reference: ECO:0000219
database_cross_reference: EFO:0005310
has_exact_synonym: RNA immunoprecipitation sequencing
has_obo_namespace: xenbase_experimental_data
id: XBED:0000076
in_subset: GEO assay types
in_subset: assay

miRNA-Seq
type: Class
subclass of: RNA-Seq
definition: MicroRNA sequencing.
created by: Joshua Fortriede
creation date: 2017-08-31T07:09:56Z
database_cross_reference: EFO:
has_exact_synonym: micro-RNA sequencing
has_obo_namespace: xenbase_experimental_data
id: XBED:0000077
in_subset: GEO assay types
in_subset: assay

ChIP-chip
type: Class
subclass of: ChIP
definition: A chromatin immunoprecipitation experiment assayed by microarray.
created by: Malcolm Fisher
creation date: 2017-09-20T10:15:22Z
database_cross_reference: EFO:0000748
has_exact_synonym: ChIP on chip
has_obo_namespace: xenbase_experimental_data
id: XBED:0000078
in_subset: Antibody methods
in_subset: GEO assay types
in_subset: assay

RIP-chip
type: Class
subclass of: immunoprecipitation
definition: RNA immunoprecipitation experiment assayed by microarray.
created by: Malcolm Fisher
creation date: 2017-09-20T10:45:53Z
database_cross_reference: ECO:0000219
database_cross_reference: EFO:0005517
has_exact_synonym: RNA immunoprecipitation chip
has_obo_namespace: xenbase_experimental_data
id: XBED:0000079
in_subset: Antibody methods
in_subset: GEO assay types
in_subset: assay

ATAC-Seq
type: Class
subclass of: Other Detection Assay
definition: Assay for transposase-accessible chromatin using sequencing (ATAC-Seq), is a method based on direct in vitro transposition of sequencing adaptors into native chromatin, and is a rapid and sensitive method for integrative epigenomic analysis. ATAC-Seq captures open chromatin sites using a simple two-step protocol.
created by: Malcolm Fisher
creation date: 2017-09-20T10:55:56Z
database_cross_reference: ECO:0000219
database_cross_reference: EFO:0007045
has_exact_synonym: Assay for transposase-accessible chromatin sequencing
has_obo_namespace: xenbase_experimental_data
id: XBED:0000080
in_subset: GEO assay types
in_subset: assay

Bio-CAP-Seq
type: Class
subclass of: Other Detection Assay
created by: Malcolm Fisher
creation date: 2017-09-20T15:55:43Z
has_exact_synonym: BioCap-seq
has_exact_synonym: biotinylated CxxC affinity purification sequencing
has_obo_namespace: xenbase_experimental_data
id: XBED:0000081
in_subset: GEO assay types
in_subset: assay

MeDIP-seq
type: Class
subclass of: immunoprecipitation
definition: An assay in which DNA is the input molecule derived from an antibody based selection process using antibodies targeting methylated DNA, which is then sequenced using high throughput sequencing technology.
created by: Malcolm Fisher
creation date: 2017-09-20T16:03:49Z
database_cross_reference: EFO:0003749
has_exact_synonym: mDIP-seq
has_exact_synonym: methylated DNA immunoprecipitation sequencing
has_obo_namespace: xenbase_experimental_data
id: XBED:0000082
in_subset: GEO assay types
in_subset: assay

Hi-C
type: Class
subclass of: Other Detection Assay
definition: Hi-C is a method for analysing 3-dimensional organisation and interaction of chromatin, belonging to the class of techniques collectively called "Chromosome Conformation Capture", in which chromatin is crosslinked, then digested, and re-ligated in such a way that only DNA fragments that are covalently linked together form ligation products. Together with 5C, Hi-C does not limit to the study to a specific locus in the genome, and can be used to study chromatin interaction across the genome. To achieve high-throughput, a biotin-labeled nucleotide is incorporated at the ligation junction, enabling selective purification of chimeric DNA ligation junctions followed by deep sequencing. Mapping the sequenced reads back to genome will reveal the origin of the fragments involved in the ligation events.
created by: Malcolm Fisher
creation date: 2017-09-20T16:26:01Z
database_cross_reference: EFO:0007693
has_obo_namespace: xenbase_experimental_data
has_related_synonym: Tethered Chromosome Conformation Capture
id: XBED:0000083
in_subset: GEO assay types
in_subset: assay

Intracytoplasmic sperm injection
type: Class
subclass of: Genetic material injection
definition: Intracytoplasmic sperm injection.
created by: Malcolm Fisher
creation date: 2017-09-22T09:09:49Z
database_cross_reference: ERO:0000641
has_exact_synonym: DISCO
has_exact_synonym: ICSI
has_obo_namespace: xenbase_experimental_data
id: XBED:0000084
in_subset: GEO manipulation types
in_subset: manipulation

Axiom
annotated source: Intracytoplasmic sperm injection
annotated property: definition
annotated target: Intracytoplasmic sperm injection.
database_cross_reference: XAO:0003147

Injection of a single sperm into a single celled embryo or an egg for the purpose of in vitro fertilization.
type: Axiom
annotated source: Intracytoplasmic sperm injection
annotated property: database_cross_reference
annotated target: ERO:0000641

SCNT
type: Class
subclass of: Genetic material injection
definition: Somatic cell nuclear transfer.
created by: Malcolm Fisher
creation date: 2017-09-22T10:08:18Z
has_exact_synonym: Somatic cell nuclear transfer.
has_obo_namespace: xenbase_experimental_data
id: XBED:0000085
in_subset: GEO manipulation types
in_subset: manipulation

Genetic material injection
type: Class
subclass of: microinjection
created by: Malcolm Fisher
creation date: 2017-09-22T10:23:25Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000086

Intracytoplasmic spermatid injection
type: Class
subclass of: Genetic material injection
created by: Malcolm Fisher
creation date: 2017-09-22T10:33:22Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000087
in_subset: GEO manipulation types
in_subset: manipulation

WTTS-Seq
type: Class
subclass of: RNA-Seq
definition: Whole Transcriptome Termini Site Sequencing.
created by: Malcolm Fisher
creation date: 2017-10-03T15:56:57Z
database_cross_reference: ECO:0000295
has_exact_synonym: Whole Transcriptome Termini Site Sequencing
has_obo_namespace: xenbase_experimental_data
id: XBED:0000088
in_subset: GEO assay types
in_subset: assay

antisense oligonucleotide injection
type: Class
subclass of: microinjection
created by: Malcolm Fisher
creation date: 2017-10-06T09:30:10Z
database_cross_reference: ECO:0000018
has_exact_synonym: ASO
has_obo_namespace: xenbase_experimental_data
id: XBED:0000089

DMED injection
type: Class
subclass of: antisense oligonucleotide injection
definition: DMED injection.
created by: Malcolm Fisher
creation date: 2017-10-06T09:32:30Z
database_cross_reference: ECO:0000018
has_exact_synonym: N,N-dimethylethylenediamine (DMED) phosphoramidate-modified antisense oligonucleotide injection.
has_obo_namespace: xenbase_experimental_data
id: XBED:0000090
in_subset: GEO manipulation types
in_subset: manipulation

LNA injection
type: Class
subclass of: antisense oligonucleotide injection
created by: Malcolm Fisher
creation date: 2017-10-06T09:41:12Z
database_cross_reference: ECO:0000018
has_exact_synonym: Locked Nucleic Acid antisense oligonucleotide injection.
has_obo_namespace: xenbase_experimental_data
id: XBED:0000091
in_subset: GEO manipulation types
in_subset: manipulation

Phosphorothioate injection
type: Class
subclass of: antisense oligonucleotide injection
definition: Phosphorothioate injection.
created by: Malcolm Fisher
creation date: 2017-10-06T09:42:48Z
database_cross_reference: ECO:0000018
has_obo_namespace: xenbase_experimental_data
has_related_synonym: maternal depletion
id: XBED:0000092
in_subset: GEO manipulation types
in_subset: manipulation

CRISPR
type: Class
subclass of: microinjection
subclass of: stable line
subclass of: transient
definition: A method of gene targetting transgenesis, both transisent and heritable, using the bacterial CRISPR system with specificity from guide RNA sequences.
created by: Malcolm Fisher
creation date: 2017-10-06T16:06:45Z
database_cross_reference: ECO:0005027
has_exact_synonym: clustered regularly interspaced short palindromic repeats-associated system.
has_obo_namespace: xenbase_experimental_data
has_related_synonym: CRISPR/Cas9
id: XBED:0000093
in_subset: GEO manipulation types
in_subset: manipulation

CLIP-Seq
type: Class
subclass of: immunoprecipitation
definition: CLIP is an antibody-based technique used to study RNA-protein interactions related to RNA immunoprecipitation (RIP), but differs from RIP in the use of UV radiation to cross-link RNA binding proteins to the RNA that they are bound to.
created by: Malcolm Fisher
creation date: 2017-10-11T15:34:53Z
has_exact_synonym: UV Cross-Linking and Immunoprecipitation
has_obo_namespace: xenbase_experimental_data
has_related_synonym: HITS-CLIP
has_related_synonym: PAR-CLIP
has_related_synonym: iCLIP
id: XBED:0000094
in_subset: GEO assay types
in_subset: assay

Epigenetic
type: Class
subclass of: ChIP
definition: A chromatin immunoprecipitation assay targeting epigenetic modifications.
created by: Malcolm Fisher
creation date: 2018-04-04T15:14:38Z
has_exact_synonym: Epigenetic ChIP
has_obo_namespace: xenbase_experimental_data
id: XBED:0000095
in_subset: ChIP type

Transcription Factor
type: Class
subclass of: ChIP
definition: A chromatin immunoprecipitation assay targeting transcription factors.
created by: Malcolm Fisher
creation date: 2018-04-04T15:17:53Z
has_exact_synonym: TF ChIP
has_exact_synonym: Transcription Factor ChIP
has_obo_namespace: xenbase_experimental_data
id: XBED:0000096
in_subset: ChIP type

Other
type: Class
subclass of: immunoprecipitation
definition: Immunoprecipitation assay on otherwise unclassified targets.
created by: Malcolm Fisher
creation date: 2018-04-04T15:20:39Z
has_narrow_synonym: Other ChIP
has_obo_namespace: xenbase_experimental_data
id: XBED:0000097
in_subset: ChIP type

antisense DNA injection
type: Class
subclass of: antisense oligonucleotide injection
definition: DNA based antisense oligonucleotide.
created by: Malcolm Fisher
creation date: 2018-04-18T15:09:08Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000098
in_subset: GEO manipulation types
in_subset: manipulation

control morpholino
type: Class
subclass of: morpholino oligo
definition: A morpholino which is intended as an experimental control.
created by: Malcolm Fisher
creation date: 2018-08-30T14:19:59Z
has_exact_synonym: CMO
has_exact_synonym: cMO
has_exact_synonym: control MO
has_narrow_synonym: mismatch control
has_narrow_synonym: random control morpholino
has_obo_namespace: xenbase_experimental_data
id: XBED:0000099
in_subset: morpholino type

splice blocking morpholino
type: Class
subclass of: morpholino oligo
definition: A morpholino targeting a splice site within an mRNA.
created by: Malcolm Fisher
creation date: 2018-08-30T14:28:40Z
has_exact_synonym: splice blocking MO
has_obo_namespace: xenbase_experimental_data
id: XBED:0000100
in_subset: morpholino type

translation blocking morpholino
type: Class
subclass of: morpholino oligo
definition: A morpholino targeting the translational start site of an mRNA, blocking translation and protein production.
created by: Malcolm Fisher
creation date: 2018-08-30T14:31:01Z
has_exact_synonym: translation blocking MO
has_narrow_synonym: ATG morpholino
has_obo_namespace: xenbase_experimental_data
id: XBED:0000101
in_subset: morpholino type

uncategorized morpholino
type: Class
subclass of: morpholino oligo
definition: A morpholino that has not been characterized.
created by: Malcolm Fisher
creation date: 2018-12-19T15:16:01Z
has_exact_synonym: uncategorized MO
has_obo_namespace: xenbase_experimental_data
id: XBED:0000102
in_subset: morpholino type

photo morpholino
type: Class
subclass of: morpholino oligo
definition: A morpholino that contains a photosensitive cleavage site.
created by: Malcolm Fisher
creation date: 2019-01-23T11:05:01Z
has_exact_synonym: Photo-Morpholino
has_exact_synonym: Photo-cleavable Morpholino
has_exact_synonym: pMO
has_exact_synonym: photo MO
has_obo_namespace: xenbase_experimental_data
id: XBED:0000103
in_subset: morpholino type

radiation
type: Class
subclass of: environmental treatment
definition: The emission of energy as electromagnetic waves or as moving subatomic particles, especially high-energy particles which cause ionization.
created by: Malcolm Fisher
creation date: 2019-01-23T11:05:01Z
has_exact_synonym: ionising radiation
has_obo_namespace: xenbase_experimental_data
id: XBED:0000104

x-rays
type: Class
subclass of: radiation
definition: X-radiation, a form of electromagnetic radiation.
created by: Malcolm Fisher
creation date: 2019-01-23T11:05:01Z
has_exact_synonym: X-radiation
has_exact_synonym: X-ray
has_obo_namespace: xenbase_experimental_data
has_related_synonym: gamma radiation
id: XBED:0000105
in_subset: GEO manipulation types
in_subset: manipulation

TALEN
type: Class
subclass of: microinjection
subclass of: stable line
subclass of: transient
definition: A method of gene targetting transgenesis, both transisent and heritable, using modified Fokl endonuclease domain recognition domains coupled to bacterial TAL effector system domains for specificity.
created by: Malcolm Fisher
creation date: 2019-02-26T09:59:45Z
database_cross_reference: ECO:0005027
has_exact_synonym: transcription activator-like effector nucleases
has_obo_namespace: xenbase_experimental_data
id: XBED:0000106
in_subset: GEO manipulation types
in_subset: manipulation

Gene Ontology (GO) Annotation
type: Class
subclass of: Curatable Data
definition: Data about protein function suitable for GO curation.
created by: Malcolm Fisher
creation date: 2019-11-08T15:24:24Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000107
in_subset: Article content types

Human Disease Annotation
type: Class
subclass of: Curatable Data
definition: Data relevant to human diseases are contained within the article.
created by: Malcolm Fisher
creation date: 2019-11-08T15:26:12Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000108
in_subset: Article content types

Article Permissions
type: Class
subclass of: Curatable Data
definition: Data relevant to the copyright classification of an article for curation.
created by: Malcolm Fisher
creation date: 2019-12-02T16:50:12Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000109
in_subset: Article content types

Open Access
type: Class
subclass of: Article Permissions
definition: Open Access copyright permissions classification for an article.
created by: Malcolm Fisher
creation date: 2019-12-02T16:50:12Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000110
in_subset: Copyright access

No Access
type: Class
subclass of: Article Permissions
definition: No Access copyright permissions classification for an article.
created by: Malcolm Fisher
creation date: 2019-12-02T16:50:12Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000111
in_subset: Copyright access

Full Access: Request Permission
type: Class
subclass of: Article Permissions
definition: Full Access: Request Permission copyright classification for an article.
created by: Malcolm Fisher
creation date: 2019-12-02T16:50:12Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000112
in_subset: Copyright access

Full Access: Permission Requested
type: Class
subclass of: Article Permissions
definition: Full Access: Permission Requested copyright classification for an article.
created by: Malcolm Fisher
creation date: 2019-12-02T16:50:12Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000113
in_subset: Copyright access

Full Access: Permission Granted
type: Class
subclass of: Article Permissions
definition: Full Access: Permission Granted copyright classification for an article.
created by: Malcolm Fisher
creation date: 2019-12-02T16:50:12Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000114
in_subset: Copyright access

Full Access: Permission Denied
type: Class
subclass of: Article Permissions
definition: Full Access: Permission Denied copyright classification for an article.
created by: Malcolm Fisher
creation date: 2019-12-02T16:50:12Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000115
in_subset: Copyright access

Curatable Temporal Development Data
type: Class
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
database_cross_reference: ECO:0000000
has_obo_namespace: xenbase_experimental_data
id: XBED:0000116
in_subset: Temperature degC

Development Environment Temperature
type: Class
subclass of: Curatable Temporal Development Data
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000117
in_subset: Temperature degC

unknown degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: na degC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000118
in_subset: Temperature degC

Axiom
annotated source: unknown degC
annotated property: has_exact_synonym
annotated target: na degC
has_synonym_type: ABBREVIATION

Four degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 39.2 degF
has_exact_synonym: 4 degC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000119
in_subset: Temperature degC

Axiom
annotated source: Four degC
annotated property: has_exact_synonym
annotated target: 39.2 degF
has_synonym_type: ABBREVIATION

Axiom
annotated source: Four degC
annotated property: has_exact_synonym
annotated target: 4 degC
has_synonym_type: ABBREVIATION

Five degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 41 degF
has_exact_synonym: 5 degC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000120
in_subset: Temperature degC

Axiom
annotated source: Five degC
annotated property: has_exact_synonym
annotated target: 41 degF
has_synonym_type: ABBREVIATION

Axiom
annotated source: Five degC
annotated property: has_exact_synonym
annotated target: 5 degC
has_synonym_type: ABBREVIATION

Six degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 42.8 degF
has_exact_synonym: 6 degC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000121
in_subset: Temperature degC

Axiom
annotated source: Six degC
annotated property: has_exact_synonym
annotated target: 42.8 degF
has_synonym_type: ABBREVIATION

Axiom
annotated source: Six degC
annotated property: has_exact_synonym
annotated target: 6 degC
has_synonym_type: ABBREVIATION

Seven degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 44.6 degF
has_exact_synonym: 7 degC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000122
in_subset: Temperature degC

Axiom
annotated source: Seven degC
annotated property: has_exact_synonym
annotated target: 44.6 degF
has_synonym_type: ABBREVIATION

Axiom
annotated source: Seven degC
annotated property: has_exact_synonym
annotated target: 7 degC
has_synonym_type: ABBREVIATION

Eight degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 46.4 degF
has_exact_synonym: 8 degC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000123
in_subset: Temperature degC

Axiom
annotated source: Eight degC
annotated property: has_exact_synonym
annotated target: 46.4 degF
has_synonym_type: ABBREVIATION

Axiom
annotated source: Eight degC
annotated property: has_exact_synonym
annotated target: 8 degC
has_synonym_type: ABBREVIATION

Nine degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 48.2 degF
has_exact_synonym: 9 degC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000124
in_subset: Temperature degC

Axiom
annotated source: Nine degC
annotated property: has_exact_synonym
annotated target: 48.2 degF
has_synonym_type: ABBREVIATION

Axiom
annotated source: Nine degC
annotated property: has_exact_synonym
annotated target: 9 degC
has_synonym_type: ABBREVIATION

Ten degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 10 degC
has_exact_synonym: 50 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000125
in_subset: Temperature degC

Axiom
annotated source: Ten degC
annotated property: has_exact_synonym
annotated target: 10 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Ten degC
annotated property: has_exact_synonym
annotated target: 50 degF
has_synonym_type: ABBREVIATION

Eleven degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 11 degC
has_exact_synonym: 51.8 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000126
in_subset: Temperature degC

Axiom
annotated source: Eleven degC
annotated property: has_exact_synonym
annotated target: 11 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Eleven degC
annotated property: has_exact_synonym
annotated target: 51.8 degF
has_synonym_type: ABBREVIATION

Twelve degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 12 degC
has_exact_synonym: 53.6 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000127
in_subset: Temperature degC

Axiom
annotated source: Twelve degC
annotated property: has_exact_synonym
annotated target: 12 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Twelve degC
annotated property: has_exact_synonym
annotated target: 53.6 degF
has_synonym_type: ABBREVIATION

Thirteen degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 13 degC
has_exact_synonym: 55.4 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000128
in_subset: Temperature degC

Axiom
annotated source: Thirteen degC
annotated property: has_exact_synonym
annotated target: 13 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Thirteen degC
annotated property: has_exact_synonym
annotated target: 55.4 degF
has_synonym_type: ABBREVIATION

Fourteen degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 14 degC
has_exact_synonym: 57.2 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000129
in_subset: Temperature degC

Axiom
annotated source: Fourteen degC
annotated property: has_exact_synonym
annotated target: 14 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Fourteen degC
annotated property: has_exact_synonym
annotated target: 57.2 degF
has_synonym_type: ABBREVIATION

Fifteen degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 15 degC
has_exact_synonym: 59 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000130
in_subset: Temperature degC

Axiom
annotated source: Fifteen degC
annotated property: has_exact_synonym
annotated target: 15 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Fifteen degC
annotated property: has_exact_synonym
annotated target: 59 degF
has_synonym_type: ABBREVIATION

Sixteen degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 16 degC
has_exact_synonym: 60.8 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000131
in_subset: Temperature degC

Axiom
annotated source: Sixteen degC
annotated property: has_exact_synonym
annotated target: 16 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Sixteen degC
annotated property: has_exact_synonym
annotated target: 60.8 degF
has_synonym_type: ABBREVIATION

Seventeen degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 17 degC
has_exact_synonym: 62.6 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000132
in_subset: Temperature degC

Axiom
annotated source: Seventeen degC
annotated property: has_exact_synonym
annotated target: 17 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Seventeen degC
annotated property: has_exact_synonym
annotated target: 62.6 degF
has_synonym_type: ABBREVIATION

Eighteen degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 18 degC
has_exact_synonym: 64.4 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000133
in_subset: Temperature degC

Axiom
annotated source: Eighteen degC
annotated property: has_exact_synonym
annotated target: 18 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Eighteen degC
annotated property: has_exact_synonym
annotated target: 64.4 degF
has_synonym_type: ABBREVIATION

Nineteen degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 19 degC
has_exact_synonym: 66.2 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000134
in_subset: Temperature degC

Axiom
annotated source: Nineteen degC
annotated property: has_exact_synonym
annotated target: 19 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Nineteen degC
annotated property: has_exact_synonym
annotated target: 66.2 degF
has_synonym_type: ABBREVIATION

Twenty degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 20 degC
has_exact_synonym: 68 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000135
in_subset: Temperature degC

Axiom
annotated source: Twenty degC
annotated property: has_exact_synonym
annotated target: 20 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Twenty degC
annotated property: has_exact_synonym
annotated target: 68 degF
has_synonym_type: ABBREVIATION

TwentyOne degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 21 degC
has_exact_synonym: 69.8 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000136
in_subset: Temperature degC

Axiom
annotated source: TwentyOne degC
annotated property: has_exact_synonym
annotated target: 21 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: TwentyOne degC
annotated property: has_exact_synonym
annotated target: 69.8 degF
has_synonym_type: ABBREVIATION

TwentyTwo degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 22 degC
has_exact_synonym: 71.6 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000137
in_subset: Temperature degC

Axiom
annotated source: TwentyTwo degC
annotated property: has_exact_synonym
annotated target: 22 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: TwentyTwo degC
annotated property: has_exact_synonym
annotated target: 71.6 degF
has_synonym_type: ABBREVIATION

TwentyThree degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 23 degC
has_exact_synonym: 73.4 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000138
in_subset: Temperature degC

Axiom
annotated source: TwentyThree degC
annotated property: has_exact_synonym
annotated target: 23 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: TwentyThree degC
annotated property: has_exact_synonym
annotated target: 73.4 degF
has_synonym_type: ABBREVIATION

TwentyFour degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 24 degC
has_exact_synonym: 75.2 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000139
in_subset: Temperature degC

Axiom
annotated source: TwentyFour degC
annotated property: has_exact_synonym
annotated target: 24 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: TwentyFour degC
annotated property: has_exact_synonym
annotated target: 75.2 degF
has_synonym_type: ABBREVIATION

TwentyFive degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 25 degC
has_exact_synonym: 77 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000140
in_subset: Temperature degC

Axiom
annotated source: TwentyFive degC
annotated property: has_exact_synonym
annotated target: 25 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: TwentyFive degC
annotated property: has_exact_synonym
annotated target: 77 degF
has_synonym_type: ABBREVIATION

TwentySix degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 26 degC
has_exact_synonym: 78.8 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000141
in_subset: Temperature degC

Axiom
annotated source: TwentySix degC
annotated property: has_exact_synonym
annotated target: 26 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: TwentySix degC
annotated property: has_exact_synonym
annotated target: 78.8 degF
has_synonym_type: ABBREVIATION

TwentySeven degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 27 degC
has_exact_synonym: 80.6 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000142
in_subset: Temperature degC

Axiom
annotated source: TwentySeven degC
annotated property: has_exact_synonym
annotated target: 27 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: TwentySeven degC
annotated property: has_exact_synonym
annotated target: 80.6 degF
has_synonym_type: ABBREVIATION

TwentyEight degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 28 degC
has_exact_synonym: 82.4 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000143
in_subset: Temperature degC

Axiom
annotated source: TwentyEight degC
annotated property: has_exact_synonym
annotated target: 28 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: TwentyEight degC
annotated property: has_exact_synonym
annotated target: 82.4 degF
has_synonym_type: ABBREVIATION

TwentyNine degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 29 degC
has_exact_synonym: 84.2 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000144
in_subset: Temperature degC

Axiom
annotated source: TwentyNine degC
annotated property: has_exact_synonym
annotated target: 29 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: TwentyNine degC
annotated property: has_exact_synonym
annotated target: 84.2 degF
has_synonym_type: ABBREVIATION

Thirty degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 30 degC
has_exact_synonym: 86 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000145
in_subset: Temperature degC

Axiom
annotated source: Thirty degC
annotated property: has_exact_synonym
annotated target: 30 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: Thirty degC
annotated property: has_exact_synonym
annotated target: 86 degF
has_synonym_type: ABBREVIATION

ThirtyOne degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 31 degC
has_exact_synonym: 87.8 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000146
in_subset: Temperature degC

Axiom
annotated source: ThirtyOne degC
annotated property: has_exact_synonym
annotated target: 31 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: ThirtyOne degC
annotated property: has_exact_synonym
annotated target: 87.8 degF
has_synonym_type: ABBREVIATION

ThirtyTwo degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 32 degC
has_exact_synonym: 89.6 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000147
in_subset: Temperature degC

Axiom
annotated source: ThirtyTwo degC
annotated property: has_exact_synonym
annotated target: 32 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: ThirtyTwo degC
annotated property: has_exact_synonym
annotated target: 89.6 degF
has_synonym_type: ABBREVIATION

ThirtyThree degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 33 degC
has_exact_synonym: 91.4 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000148
in_subset: Temperature degC

Axiom
annotated source: ThirtyThree degC
annotated property: has_exact_synonym
annotated target: 33 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: ThirtyThree degC
annotated property: has_exact_synonym
annotated target: 91.4 degF
has_synonym_type: ABBREVIATION

ThirtyFour degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 34 degC
has_exact_synonym: 95 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000149
in_subset: Temperature degC

Axiom
annotated source: ThirtyFour degC
annotated property: has_exact_synonym
annotated target: 34 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: ThirtyFour degC
annotated property: has_exact_synonym
annotated target: 95 degF
has_synonym_type: ABBREVIATION

ThirtyFive degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 35 degC
has_exact_synonym: 95 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000150
in_subset: Temperature degC

Axiom
annotated source: ThirtyFive degC
annotated property: has_exact_synonym
annotated target: 35 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: ThirtyFive degC
annotated property: has_exact_synonym
annotated target: 95 degF
has_synonym_type: ABBREVIATION

ThirtySix degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 36 degC
has_exact_synonym: 96.8 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000151
in_subset: Temperature degC

Axiom
annotated source: ThirtySix degC
annotated property: has_exact_synonym
annotated target: 36 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: ThirtySix degC
annotated property: has_exact_synonym
annotated target: 96.8 degF
has_synonym_type: ABBREVIATION

ThirtySeven degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 37 degC
has_exact_synonym: 98.6 degF
has_obo_namespace: xenbase_experimental_data
id: XBED:0000152
in_subset: Temperature degC

Axiom
annotated source: ThirtySeven degC
annotated property: has_exact_synonym
annotated target: 37 degC
has_synonym_type: ABBREVIATION

Axiom
annotated source: ThirtySeven degC
annotated property: has_exact_synonym
annotated target: 98.6 degF
has_synonym_type: ABBREVIATION

ThirtyEight degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 100.4 degF
has_exact_synonym: 38 degC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000153
in_subset: Temperature degC

Axiom
annotated source: ThirtyEight degC
annotated property: has_exact_synonym
annotated target: 100.4 degF
has_synonym_type: ABBREVIATION

Axiom
annotated source: ThirtyEight degC
annotated property: has_exact_synonym
annotated target: 38 degC
has_synonym_type: ABBREVIATION

ThirtyNine degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 102.2 degF
has_exact_synonym: 39 degC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000154
in_subset: Temperature degC

Axiom
annotated source: ThirtyNine degC
annotated property: has_exact_synonym
annotated target: 102.2 degF
has_synonym_type: ABBREVIATION

Axiom
annotated source: ThirtyNine degC
annotated property: has_exact_synonym
annotated target: 39 degC
has_synonym_type: ABBREVIATION

Fourty degC
type: Class
subclass of: Development Environment Temperature
created by: Malcolm Fisher
creation date: 2020-06-18T20:3:26Z
has_exact_synonym: 104 degF
has_exact_synonym: 40 degC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000155
in_subset: Temperature degC

Axiom
annotated source: Fourty degC
annotated property: has_exact_synonym
annotated target: 104 degF
has_synonym_type: ABBREVIATION

Axiom
annotated source: Fourty degC
annotated property: has_exact_synonym
annotated target: 40 degC
has_synonym_type: ABBREVIATION

DNase-Seq
type: Class
subclass of: Other Detection Assay
created by: Malcolm Fisher
creation date: 2020-07-27T14:57:56Z
database_cross_reference: EFO:0003752
has_exact_synonym: DNA nuclease sequencing
has_exact_synonym: DNase I hypersensitive sites sequencing
has_exact_synonym: DNase-hypersensitivity seq
has_exact_synonym: DNaseI-Seq
has_obo_namespace: xenbase_experimental_data
id: XBED:0000156
in_subset: GEO assay types
in_subset: assay

predation
type: Class
subclass of: environmental treatment
created by: Malcolm Fisher
creation date: 2020-08-13T10:26:52Z
database_cross_reference: ECOCORE:00000102
has_obo_namespace: xenbase_experimental_data
has_related_synonym: acute predation
has_related_synonym: chronic predation
id: XBED:0000157
in_subset: GEO manipulation types
in_subset: manipulation

Open Access: Any CC license
type: Class
subclass of: Open Access
created by: Malcolm Fisher
creation date: 20202-10-08T10:53:23Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000158
in_subset: XED copyright pmc subset

Open Access: CC BY (Attribution)
type: Class
subclass of: Open Access: Any CC license
definition: Creative Commons Attribution license
created by: Malcolm Fisher
creation date: 2020-10-08T10:53:23Z
has_exact_synonym: CC BY
has_obo_namespace: xenbase_experimental_data
id: XBED:0000159
in_subset: XED copyright pmc subset

Axiom
annotated source: Open Access: CC BY (Attribution)
annotated property: definition
annotated target: Creative Commons Attribution license
database_cross_reference: CC BY

Open Access: CC BY-ND (Attribution, no derivatives)
type: Class
subclass of: Open Access: Any CC license
definition: Creative Commons Attribution-NoDerivatives license
created by: Malcolm Fisher
creation date: 2020-10-08T10:53:23Z
has_exact_synonym: CC BY ND
has_exact_synonym: CC BY-ND
has_obo_namespace: xenbase_experimental_data
id: XBED:0000160
in_subset: XED copyright pmc subset

Axiom
annotated source: Open Access: CC BY-ND (Attribution, no derivatives)
annotated property: definition
annotated target: Creative Commons Attribution-NoDerivatives license
database_cross_reference: CC BY-ND

Open Access: CC BY-NC (Attribution, noncommercial)
type: Class
subclass of: Open Access: Any CC license
definition: Creative Commons Attribution-NonCommercial license
created by: Malcolm Fisher
creation date: 2020-10-08T10:53:23Z
has_exact_synonym: CC BY NC
has_exact_synonym: CC BY-NC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000161
in_subset: XED copyright pmc subset

Axiom
annotated source: Open Access: CC BY-NC (Attribution, noncommercial)
annotated property: definition
annotated target: Creative Commons Attribution-NonCommercial license
database_cross_reference: CC BY-NC

Open Access: CC BY-NC-ND (Attribution, noncommercial, no derivatives)
type: Class
subclass of: Open Access: Any CC license
definition: Creative Commons Attribution-NonCommercial-NoDerivatives license
created by: Malcolm Fisher
creation date: 2020-10-08T10:53:23Z
has_exact_synonym: CC BY NC ND
has_exact_synonym: CC BY-NC-ND
has_obo_namespace: xenbase_experimental_data
id: XBED:0000162
in_subset: XED copyright pmc subset

Axiom
annotated source: Open Access: CC BY-NC-ND (Attribution, noncommercial, no derivatives)
annotated property: definition
annotated target: Creative Commons Attribution-NonCommercial-NoDerivatives license
database_cross_reference: CC BY-NC-ND

Open Access: CC BY-NC-SA (Attribution, noncommercial, share-alike)
type: Class
subclass of: Open Access: Any CC license
definition: Creative Commons Attribution-NonCommercial-ShareAlike license
created by: Malcolm Fisher
creation date: 2020-10-08T10:53:23Z
has_exact_synonym: CC BY NC SA
has_exact_synonym: CC BY-NC-SA
has_obo_namespace: xenbase_experimental_data
id: XBED:0000163
in_subset: XED copyright pmc subset

Axiom
annotated source: Open Access: CC BY-NC-SA (Attribution, noncommercial, share-alike)
annotated property: definition
annotated target: Creative Commons Attribution-NonCommercial-ShareAlike license
database_cross_reference: CC BY-NC-SA

Open Access: CC BY-SA (Attribution, share-alike)
type: Class
subclass of: Open Access: Any CC license
definition: Creative Commons Attribution-ShareAlike license
created by: Malcolm Fisher
creation date: 2020-10-08T10:53:23Z
has_exact_synonym: CC BY SA
has_exact_synonym: CC BY-SA
has_obo_namespace: xenbase_experimental_data
id: XBED:0000164
in_subset: XED copyright pmc subset

Axiom
annotated source: Open Access: CC BY-SA (Attribution, share-alike)
annotated property: definition
annotated target: Creative Commons Attribution-ShareAlike license
database_cross_reference: CC BY-SA

Open Access: CC0 (Public domain)
type: Class
subclass of: Open Access: Any CC license
definition: No Rights Reserved
created by: Malcolm Fisher
creation date: 2020-10-08T10:53:23Z
has_exact_synonym: CC0
has_obo_namespace: xenbase_experimental_data
id: XBED:0000165
in_subset: XED copyright pmc subset

Axiom
annotated source: Open Access: CC0 (Public domain)
annotated property: definition
annotated target: No Rights Reserved
database_cross_reference: CC0

cDNA clone-based transcript expression assay
type: Class
subclass of: Gene Expression Assay
definition: A method which assesses transcript expression by reverse transcription of purified mRNA into the corresponding complementary DNA (cDNA) before insertion into a vector, allowing synthesis of a large number of copies of the sequence for analysis.
created by: Malcolm Fisher
creation date: 2021-02-08T22:55:23Z
database_cross_reference: MMO:0000645
database_cross_reference: OBI:0600064
has_obo_namespace: xenbase_experimental_data
has_related_synonym: cDNA
id: XBED:0000167

Axiom
annotated source: cDNA clone-based transcript expression assay
annotated property: definition
annotated target: A method which assesses transcript expression by reverse transcription of purified mRNA into the corresponding complementary DNA (cDNA) before insertion into a vector, allowing synthesis of a large number of copies of the sequence for analysis.
database_cross_reference: Mosby:Mosbys_Medical_Dictionary--8th_Ed
database_cross_reference: Segen:Segens_Medical_Dictionary_2012

PAM
type: Class
subclass of: Curatable Data
definition: A sequence of 3-6 nucleotides, typically of the form NGG, immediately adjacent to a guide RNA target site. This site is required for cleavage to occur in the CRISPR gene editing system.
created by: Malcolm Fisher
creation date: 2021-03-16T10:38:51Z
has_exact_synonym: protospacer adjacent motif
has_obo_namespace: xenbase_experimental_data
id: XBED:0000168

predictionMethodsMatched
type: Class
subclass of: Orthology status
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000169
in_subset: XED Orthology prediction finding

predictionMethodsNotMatched
type: Class
subclass of: Orthology status
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000170
in_subset: XED Orthology prediction finding

predictionMethodsNotCalled
type: Class
subclass of: Orthology status
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000171
in_subset: XED Orthology prediction finding

Orthology Source
type: Class
subclass of: Curatable Data
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000172

Ensembl Compara
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000173
in_subset: XED Orthology prediction method

Orthology status
type: Class
subclass of: Curatable Data
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000174

HGNC
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000175
in_subset: XED Orthology prediction method

Hieranoid
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000176
in_subset: XED Orthology prediction method

InParanoid
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000177
in_subset: XED Orthology prediction method

OMA
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_exact_synonym: Orthologous MAtrix
has_obo_namespace: xenbase_experimental_data
id: XBED:0000178
in_subset: XED Orthology prediction method

OrthoFinder
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000179
in_subset: XED Orthology prediction method

OrthoInspector
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000180
in_subset: XED Orthology prediction method

PANTHER
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000181
in_subset: XED Orthology prediction method

PhylomeDB
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000182
in_subset: XED Orthology prediction method

Roundup
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000184
in_subset: XED Orthology prediction method

TreeFam
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000185
in_subset: XED Orthology prediction method

ZFIN
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-04-01T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000186
in_subset: XED Orthology prediction method

fastortho
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-05-27T10:38:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000187
in_subset: XED Orthology prediction method

proteinortho
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-05-28T12:23:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000188
in_subset: XED Orthology prediction method

swiftortho
type: Class
subclass of: Orthology Source
created by: Malcolm Fisher
creation date: 2021-05-28T12:23:51Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000189
in_subset: XED Orthology prediction method

genotype
type: Class
subclass of: Curatable Data
definition: A genotype is a variant genome, complete or incomplete.
created by: Malcolm Fisher
creation date: 2021-08-31T17:38:51Z
database_cross_reference: SO:0001027
has_obo_namespace: xenbase_experimental_data
id: XBED:0000191

mutant gene
type: Class
subclass of: genotype
definition: A variation in the nucleic acid sequence of a specific gene.
created by: Malcolm Fisher
creation date: 2021-08-31T17:38:51Z
database_cross_reference: UMLS:C0678941
has_obo_namespace: xenbase_experimental_data
id: XBED:0000192

vivo morpholino
type: Class
subclass of: morpholino oligo
definition: A morpholino with a delivery moiety promoting uptake through the cell membrane.
created by: Malcolm Fisher
creation date: 2021-11-19T19:55:51Z
has_exact_synonym: vivo MO
has_exact_synonym: vivo-morpholino
has_obo_namespace: xenbase_experimental_data
id: XBED:0000193
in_subset: morpholino type

histochemistry
type: Class
subclass of: histology
created by: Malcolm Fisher
creation date: 2022-03-25T11:22:20Z
database_cross_reference: ECO:0001050
database_cross_reference: MMO:0000497
has_exact_synonym: HC
has_obo_namespace: xenbase_experimental_data
id: XBED:0000194
in_subset: assay

Axiom
annotated source: histochemistry
annotated property: has_exact_synonym
annotated target: HC
has_synonym_type: ABBREVIATION

in corpus assessment
type: Class
subclass of: Curatable Data
created by: Malcolm Fisher
creation date: 2022-09-01T16:36:40Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000195

in corpus
type: Class
subclass of: in corpus assessment
created by: Malcolm Fisher
creation date: 2022-09-01T16:36:40Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000196
in_subset: Corpus

outside corpus
type: Class
subclass of: in corpus assessment
created by: Malcolm Fisher
creation date: 2022-09-01T16:36:40Z
has_obo_namespace: xenbase_experimental_data
id: XBED:0000197
in_subset: Corpus

WTSS-Seq
type: Class
subclass of: RNA-Seq
definition: Whole Transcriptome Start Site Sequencing.
created by: Malcolm Fisher
creation date: 2023-09-13T14:26:12Z
database_cross_reference: ECO:0000295
has_exact_synonym: Whole Transcriptome Start Site Sequencing
has_obo_namespace: xenbase_experimental_data
id: XBED:0000198
in_subset: GEO assay types
in_subset: assay

Dissociation
type: Class
definition: Dissociation of an embryo, tissue, or explant by chemical, enzymatic or mechanical methods into indivdual cells.
created by: Malcolm Fisher
creation date: 2023-10-05T17:18Z
has_exact_synonym: Dissociation
has_obo_namespace: xenbase_experimental_data
id: XBED:0000199
in_subset: GEO manipulation types
in_subset: manipulation

Reaggregation
type: Class
definition: Reaggregation of an embryo, tissue, or explant from indivdual cells.
created by: Malcolm Fisher
creation date: 2023-10-05T17:18Z
has_exact_synonym: Reaggregation
has_obo_namespace: xenbase_experimental_data
id: XBED:0000200
in_subset: GEO manipulation types
in_subset: manipulation

target protector morpholino
type: Class
subclass of: morpholino oligo
definition: A morpholino targeting the microRNA response element in a gene's 3'UTR protecting the gene from miRNA mediated repression.
created by: Malcolm Fisher
creation date: 2024-01-24T15:56:10Z
has_exact_synonym: TP MO
has_obo_namespace: xenbase_experimental_data
id: XBED:0000201
in_subset: morpholino type

atomic force microscopy
type: Class
subclass of: morphology
definition: A technique for imaging surfaces and measuring various electrical or mechanical properties.
created by: Malcolm Fisher
creation date: 2024-09-08T09:01:10Z
has_exact_synonym: AFM
has_obo_namespace: xenbase_experimental_data
id: XBED:0000202
in_subset: PHENO assay types
in_subset: assay